BtaINT0089097 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010639 | MAP2K7
Description
mitogen-activated protein kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6847]
Coordinates
chr7:17898095-17898470:+
Coord C1 exon
chr7:17898095-17898231
Coord A exon
chr7:17898232-17898306
Coord C2 exon
chr7:17898307-17898470
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
ACGGCGACCCCGCCCCCCAGGCG
3' ss Score
6.61
Exon sequences
Seq C1 exon
AGCCCCCGTTCCCTGCGGCGCCCGGGCCCTGGCTGCGCCGACCCCTTTTCAATCTGGAGCTGTCAGACGCGGAGGACGCCTTCCCGCGCCGTGCGGGGCCGCTCGAGGTCCCAGCGGACAGCCGCGTGTTTGTGCAG
Seq A exon
GTAGACGCGGGACGCACGGAGGCCGGGTGAGGGCCGGTGAGGGCTGCCGATCCTGACGGCGACCCCGCCCCCCAG
Seq C2 exon
GCGGCCCTGGCCCGTCCCTCCCCACGCTGGGGCCTGGCCCTGCACGGCTGCTCCGTAACACCTTCCTCGCGCCCGGCCCTGGGCCCCGCCCTGGCGCTGCTGCGCGGGGGCTGCTCCGCCGACTCCTCGGTCACCTTCCCGCCACCGCGGCCGCTCCTCGGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010639:ENSBTAT00000014063:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACCCCTTTTCAATCTGG
R:
GAGGAAGGTGTTACGGAGCAG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]