BtaINT0090369 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47830050-47832973:-
Coord C1 exon
chr2:47832647-47832973
Coord A exon
chr2:47830259-47832646
Coord C2 exon
chr2:47830050-47830258
Length
2388 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTATATTTTTCATACTATAGGTG
3' ss Score
8.26
Exon sequences
Seq C1 exon
GCGGTTCAGGACCATCCTCCTCCATAGCCATAGCTGGCATCAACCACCCTGCCATCACAAAGACAACATCTGTTCTTCAAGACGGCGTCATAGTCACCACCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGATTTTCCTTTTGTTGGCCAGGAGCACGCACTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCTTCCAGCCTTCAGCAGGAGAAG
Seq A exon
GCAAGTCTGAGATCAACCTCCACCCTTTAGGTTTTCTCAACCCGAATGTAAACGCTGCTTTAGCTTTTCTCTCCGGTGACATGGATGGGCAGGTATTGCAGCCTGTTCACTTTCAACTCTTAGCAGCCCTGCTTCAGAACCAAGCCCACGCAGCTGCCATGCTTCCCCTGCCATCTTTCAATCTGGCCATCTCAGATATTTTGCAACAGCAAAATACCCCCTTACCCTCATTAACACAGATGACAGCCCCACCAGACCATTTGCCAAGCAATCAGTCAGAGAACAGCCGAGCTGAGACCCTTTTAACCAACCCCCTGGGGAACCCTTTACCAAGCTTTGCAGGCAGTGACACTACTTTTAACCCCCTCTTCCTCCCAGCTGTCACTGGGGCCTCAGGATTAATGGCCTTGAATCCCCAGCTGTTGGGAGGTGTCCTGAACTCGGCATCGGCCAACACCGCTAATCATCCAGAGGTTTCCATAGCAACTTCTTCCCAGGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGACTGTCTCAACACTTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAATATATCTAATAATGCTGGGAATACACCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCTTGGTAAGTTAAATTTTTTCACAAATTTTTACAAAAGAAACGTTTTTCTAATTCTATTTTCTCCTTTAAAAAAAAAACCTCCATTTTGTCACACTATTTTTAAAAATGTTTTTGTTATGTCACAGCTTGCTTAAGGAAGAACTAAATATAATAACACCCACATACAACCATAGTTATACAAACATGAAAATGACTTTTTCCTTTTCCCCTATTCTAGAAATACTAAATGTCATTTTAATCTGCCTTCTCTCCTAATTCTGATGCCACCTAAACCTAACCTACTCATCATTCTCTTAAGCCAAGTAGTGTCTTATTTTTCAAATAATTAAAGCACAGGTACACCTTAAAAATAACATTTATTTGAATTTTAGTTGATGTGGCATCACAGGGTTAGTATGAGCAGCTGCACTGTGGATGAAAACAGTTTGAGGAAGTGCTTTTCCAGGTGATCCCTAAATTAATGAAACTAAATGCTTATCCATAAGAAACTAAATGCTTAAAATAAGAAACAAGACATAAAAACATTCAAAGTTAATGCTTGCCCAAGTTCAAGGAAACAAATAGCTACTGCTCGGTTTTCTCAAACAGTATTATTCTTTAGAACTTTGTGGCTTAAAAACAAAATCCTTTATGTAGATTATCTTATCTCAAAAAATTTATAAAATCTTGTCAAGTATATTCAGCTGTTTGATGCCGGTAATTGTAGTATAGAGATGGTGCCCATAAAGTCTGGAAACATAGGCAAATGTACATGATATTGTCAAGGGCATCTTCAGTAGCTAAAAAAATAATATGTTTCTAGTTTTCATAAGCACCTTTATAAAATAGTTTAATTACTCCTATTTGGCAATCAAATTAGTGTAGTAAAGAACCTAAAAAGCGCTACAGATTTCAAGTCATAGGACAATTTCTATGACATTATCCTCAAAATAAGGTCAATGTAATTTCAAAACAAGTTAATTTTGAAGTTCGAATATAACTTTGGTATTAACTATCGAAGCCTGGTGGGCTGCTGTCCAATTGGGTCGCACAGAGTCGGACACAACTGAAGCGACTTAGCAGCAGCAGGAGCAGCATCCTATCTGATTATATAACATTTATTCTTTATGACTATGACAGTGAATTTTTCTGTATTACTAGCTTTATTTACAATTTTAATTTTAGGTAACCAAAATACCGAATACATACTTTATGTAAAAACAAAATGTATATTAAAACAGACAAAATACATATTAATACATATTTCTAAACCAAATTTAATTTGATTTGGTGGTAGTTATTATTATGGCTTGAGAACTAAGTTTTGTAAACAGGCCTGGTCAGGCCCACGTATTTTAACTATCTTATGATTGCTAAAGCATTTAGGGCTAATTTTAACCTTTAATTGTGGTTGCTTTAACAAAAATGGCTTCAAGGAATTCTATGACACTGAAGATCAATATATAAGGATTGGCTAATGGATAGACCAAAAACTAACTAGTCTCTCCATGATATGAAAGATAAATAATGATTATGAAAGATAAATAAGAAAATTAGTCTTTCTTACCACTTAGTAAGACTTTGAGGAGAAAAAGAGAAAAGAGTTACCATGTAAGTCTAGTTTTTAGTTTTTTTTAGAAATCCTCAAGAAAGATAGGCATAGGACCTCCAAAGAATCACATTGACTTATATTTTATATTTTTCATACTATAG
Seq C2 exon
GTGACATGCCCTCAATAAACAGTACTTTGAATAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAATCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTCCAGGCATTTCAAGGACAGTCCACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592:ENSBTAT00000061479:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=NA C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]