BtaINT0091446 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45041277-45042525:-
Coord C1 exon
chr7:45042319-45042525
Coord A exon
chr7:45041488-45042318
Coord C2 exon
chr7:45041277-45041487
Length
831 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
CTCACATCATGGCCACCCAGGTC
3' ss Score
4.48
Exon sequences
Seq C1 exon
CTGAGCATGTTGCGCATCTCGCCATCCATGGGCCATTCGCTGGACGTGGGGTTGGCCCTGCGGCACCTGCTTTTCCTGCTGGAGTACTGCATGGTGACTGGCTATGACTGGTGGGACATCCTGCTGCACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGAAGCTGCATGAGGAGTACACACGCCAGAAGGCCGAGCTGCAGCAG
Seq A exon
GTGCCGGCCCCTCCCCGCCCTCCCCTGGGGCCCCCTTCTTACCCGTGGGTCAGGCAGCCCACCTCCCTGCCTTCTCAGCCCAGGAGGGTGCGGTTGCAGGCCTGGCTGCACCTGCCTCTGCGTGTCAGTGGAGGCCTTTGCCCCTGCGATAAGAACAGTGACCTCGAGTTTTAAAGATGAGAGGGGCAGGAAGAAATGATCCCCCAGACGCAACCTGGCGTAACTGCAAACCTAGAGCCTCCATGAGGTCAGCACTGCTAGGAATCCGGAATTGTCCTCTGTGCCTCGGTCTCCAACACGAGGAGGAAACAGAAAGGAGAGGTCGCGTGGTTTTTAGCAGCCCGCTCAGATGTGCGAGAGCTCGGATGTGCGGGGCTTAGATCTGAGAGAGCTCAGATGTGAGAGGGTGCTGCCGGCGTGAACTGCACAGGAGGGAGCTGGCTTCAGAGCCAGGAATACCGCTAGCGTCCAGCCACTCAGTGCTCGGCTGAGCTGTGTACGCGCACATTGATGCTGTCAGTCCTTCAGTCGTGGCATCCCAGGAGACATCAGGGTCGAGGAGTGAGGTGGGGTAGAGCAGCATCCCCGCCCCTATCCACTTCATGCCAGGCACCCCCAAATCGTTAGGGATCCCAGACGTGGCCCTTTGGCCCCTGGGGTAGACCCACCCACAGGTTGAAACCCTGCTGTCCTGTGAGGGAAGGTTCTACTTGATTCTGCCAGAAGGAGGGCAAGGCCCAGAGATTTAGCCCCTTGCCCATTGGGCCCAGCGCCTTGCTCTGGCCCCGCCCTGAGGCGCGAGCCCCAATTGCTCACATCATGGCCACCCAG
Seq C2 exon
GTCCTGTCCACCCGGATCCTGGCCATGAAGGCCTCGCTGTGCAAGCTGTCGCCCTGCACGGTGACTCGCGTTTGTGACTACCACGCAAAGCTTTTCCTCATCGCCATCAGCTCCACGCTGAAGTCGCTGCTGCGCCCGCACGTGCTCAACACACCCGACAAAAGTCCTGGCGACCGGTTGACCGAAATCTGTGCCAAGATCACAGACGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217:ENSBTAT00000064681:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.5=100)
A:
NA
C2:
PF116353=Med16=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTCCTGCTGGAGTACTG
R:
GACGTCTGTGATCTTGGCACA
Band lengths:
350-1181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]