BtaINT0091698 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50795912-50796263:+
Coord C1 exon
chr16:50795912-50796040
Coord A exon
chr16:50796041-50796131
Coord C2 exon
chr16:50796132-50796263
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCG
5' ss Score
5.65
3' ss Seq
CCTTTGCTGCTCTGTTGCAGCCT
3' ss Score
9.03
Exon sequences
Seq C1 exon
CCTGCCCTGCTGGCTGGTTTGGACCTGGCTGCCAGACGCAGTGCTCCTGTGCCAACGATGGGCTCTGCCACCCAGTGACCGGCCGGTGCAGCTGCGCCCCTGGGTGGACTGGCCTCAGCTGCCAGAGAG
Seq A exon
GTAGCGGCCTGGTGTCCAGGCGTCCCTCCCCACCCCTGACCCGACTGTGGTCACCTGCGCAGGGTGCCCAGCCTTTGCTGCTCTGTTGCAG
Seq C2 exon
CCTGTGACAGCGGCCACTGGGGCCCCGACTGCAGCTTCACCTGCAACTGCAGTGCAGGCCACGGGGGCTGTGACGCCGTCAGCGGCCTGTGTGTGTGTGAAGCCGGCTACGTGGGCCCGCGGTGTGAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(70.2=75.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(27.7=28.9),PF0005319=Laminin_EGF=PU(63.8=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGGTTTGGACCTG
R:
TTGCAGGTGAAGCTGCAGTC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development