BtaINT0092756 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039186 | MGC151949
Description
Bos taurus glycoprotein galactosyltransferase alpha 1, 3-like (LOC527409), mRNA. [Source:RefSeq mRNA;Acc:NM_001077974]
Coordinates
chr11:92276748-92278566:-
Coord C1 exon
chr11:92278481-92278566
Coord A exon
chr11:92276781-92278480
Coord C2 exon
chr11:92276748-92276780
Length
1700 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TGCTTTTCATTTATTCTAAGCAC
3' ss Score
4.37
Exon sequences
Seq C1 exon
GACAGAATGAGATACCAAAGGAAAACAATTCAAGGGTTATTATTTTTATTGTTTCTGTGGACCTTTCAGAGAATGTATCATTTCAG
Seq A exon
GTAACTTAAAAAAAATTAATGATATTTTATCTCATGTTGGTAAAGGATCTAGTGTATTCAGAAGGGTGATAAATTCTCCCCCTGAATGAATCATCATCCAAATATACCCAATTATATCCAAATATATTAGCATAAACATAGTCTTCAGCATAAAAGTTCTTTGTTTCTAATGTGATCAAAGGTAATGTAATTTCTGTAGGTCCATATGTGCATGGAGAAGCGATGTTAAGCTACCAAGAAGTTACCATGGAATTAATGACAGTGTAATGTTAGTACATGTTGTAAACTGGCCATTTTTACATGGGTGGCATTAAAAAAAAAGTTCCTAATATTGGTGACTTCACACATTAAGTGTGGTATTTGCCCTCCACATATTTGAGCAAGTAGAGAGATTTCATTGGAAATTAGGAAATTTCATTTTTTCTTTTGCTTGGTTTCTTTGGCTGTGCTGCACGGCTTTTGGCAGTGAAAGAAGAGTCCTAACCTTTGGACCATCAGGAAATTCCCACAAATGTCATTTTTTAAATGTTATTAAGCAAGCTTCTCTGTCATTTGTATCTCAAATAATTACTTTGTTTTTTTTTTTTTTTGATGTAGCATGCAGTCATAATTGTAATGATTTTTATCATGTTTATTACTGTATCTCTAAAACCAATAATGTATTTGGCATCTAGTGTGTGTCTTAGTCTATTTAAGCTACTTTAACAAAATTCCATAGACTGATTGGCTTATGAACTACAGAAATTTCTCACAGTTCTGGAGGTTGATAAGTCCAGGATCAAGGCACCAACTGATCTGGTGTCTGTTGAGGATACATTTTCTAGTTCATACACAGCCATCTTCCCAATGTGTCCTTCAGTAGCAGAAAAGTCTCTGCCACGGGGTCTCTTTCCCAAGGACATCAATCACATTCATGAGGGCTCCATCCTCATGATCTAATCACCTCCCAAAGGCCCTACCTCCTAATGCCATCACCTTAGGAGTTAGGACTTCAACATACAAATTTGAGGGGCATGCAAATATTTCATATATAACATTAAATGTTCATTAAATATTTGGTAATATTAGATAACAAAATTAGGTAATAAAATGAATGGGTTTATAGGGATATAAGTCCTGGGTGTTTATTGGTAGGACTGATGTTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGAGAAGAGCTGACTCATTTGAAAAGACCCTGATGCTAGGAAAGAATGAGGGCAGAAGGAGAAGGGGACGACAGAGGATGAGACGGTTGGATGGCATCACCAACTCAATGGACATGAGTTTGGGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGTGGTTCATGGGGTCGCAAAGACTCGGACACTACTGAGCAACTGAACTGAACTGATCTCTGTCTGCTGGCTAAGTTGCTTCAGTCATGTCCTACACTTTGCGACCCCATGGACTATGGCCCGCCAGGCTTCTCTGTCCGTGGCATTCTCCAGACAAGAATACTGGAGTGGGTAGCCAATTCCATCCTCCAGGGAATCTTCCCAACCCAGGGACTGAACCTACGTCTCCTGCGTTGCAGGTAGATCCTTTACCACTGAGCCACCAGGGGAGTCCCAGGGAAATAACTCTAGTTATATTAAATGTGGAAACCCTTTATATAAGTTTGAAATTAATACAATGCTTTTCATTTATTCTAAG
Seq C2 exon
CACAAAGAAATTACAGAGGATGTATCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039186:ENSBTAT00000057486:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(4.1=48.1)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development