BtaINT0094715 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009924 | MR1
Description
Bos taurus major histocompatibility complex, class I-related (MR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001190298]
Coordinates
chr16:63641808-63654100:+
Coord C1 exon
chr16:63641808-63641895
Coord A exon
chr16:63641896-63653824
Coord C2 exon
chr16:63653825-63654100
Length
11929 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
GCCATTCATGTGTCTTCCAGGGT
3' ss Score
8.71
Exon sequences
Seq C1 exon
AAGAATCAGAAGAGAAGGATTTTAGAGGGGCTGATGATGCTCCTATTGCCTCTCATCATTGTATTAATGATGAAGCTCAGCGATGCTC
Seq A exon
GTGAGTACCCCAAGTTCTCTTTACTCTAAACTCCCCAGCTGAGGGAGCCTCTGGGAAACAGTTTGTCTTCCTGAAACTCCTGGTGAAGTGAAGAAGCCAGGGGCAGAAAAGTGTGTTTATTCAACCCAGGACTTGTTGGAGTGATGAACCGGAAAGCTATACAGTTTTCCAGTTTGTGTGCGTAGGATCTTGATGTTGCCCACCTTTTCTGAGGGGTTGAAAGCCATTCTGGAAAGACCCTCTGGGTAACTTCCTCATTCCTATTTCCTTTCTGCACGTTGTTCCCTGTCTTTTCTGCTCATGTCTTTTCTTTCACTTTTGTTTTTCCTCCCTACTAGCTTGGTAAGTCTCATGAGGATGTGGTCAGGGTTTCAGGGGCATTGAAGAGTAGAGCAGATCCATTGTTCACATTTATTTGTTTATCCTCCTCACCATAAGCCCAACCTGTAACACAAGATCCCAGAAAGATAAAACCATGGTTCTGGACTTGTGTACTGAGTGTAAGAGTTATCAACTGAGTAGAAAAAGATTTTCATTGTATGGGGAACCTGTGTTACTAGGGAAGCAGTTGCTTTCTGTTGCCCCAAATACACAAGAAGACTGGTGGGCTGGAAGCAACAGGCTTCTCTGCTCTAAGCAACTGCTTTCTCAGCTAGAGTTCAGCACTCCCAGGGGGTTGCTGGACAACATCTGGGCTACCATCATAGACAACGATGTATGAGCATGATGGGAAGGAGCTCTTTCAAAATATCTGTGTGTTTCTTGATGGCCTACTATGTGATGGCACTTTTGGGGACATGACCATGGACAAGATAGACATAGGTCCTAATTCTATAGAAACTTCTATAGAAAAGTCCTACCATTCAAGTCAGAAATGGGAAAGATTGAAGGTGAAGGTAAGAGACAGAGGATAAAAAGAGGGCAGGAGTGATATTTCTAGAAGGTAAAAAGCCTATATATTGCCTGTATTTGATTCTCAAAGAACTCTCCAATAATATGACCACAATACCCCCTAAATATAATCTTTTATGTGTTGGTCTAACTAACCCTTGTGGCTGAGACAATATCCCCATTTCCCGATGAGGAGATCCAGACCGAGAGAGGTGGACTCAGCTCACATAATGAACAGAGTCTGAAGCACATGCAGGTCTTCCCGCCCACAGCCCCTGGCTTTCCCACAAAATCGTAGCGTCTCTGGATGTGGATGCTCCGCACTTTGATAACTGACAGCATGAGAAATAGAACCAGTCGCCTATGAAGGGCAGGTAAGGTCACCTTGTGCTGGCTCTCCTTCTCTTCCGCTGCATCCTTCTCGGCCCTGTGTTGTGTCCCGGGGCGTTGACTGCTACAGGCGACATCACCCGGTCTCTCTCACAGGCTGATTTCTGTTTGGGTTCACCCAATAGGAGACGCCGAGGGAAAGCAATCAGAGAGCGAAGCGAGGTTGAGGTATTACCTTCTTCTTTTCCCTCTTTCTCTAGTGCCTCTGGTAGTATAATAGCTGTGTCCCTCCACAATATAGTTTTCCATGAATAGCCCCTTTTTCATGGTTCTAGCTACCACTGGGCTTCAGGAACACTATTTGCTCCTCTAATCGCTACAACACTAGGGCTGGTAACGGCTTCTTATAACTGCTAGCTTCTGGGTTCCCTAACATCCCTCATTTGTTCCTGTAACCTTGCTCACAGCTCTGTGTAGAGTCCCTCCACTGAAGTTTCTTCATGTGACTCATCTAGAGTGAAGGCTATTACCTGCCAGGACCCTGACTGAGCACGCTGAGCATTGAGGAGTGCTAACAGAGGGGAGATGGAGTTATGAAAAAGGACTTGGTCTTGTTGATATTTGGACCTAATGCTGGCCCTGAGTGGGAGCTTCTAGGGGTGGAAATGCAGGGAGGAGATACCAGAGCGTTTGAGATCACAGAGCAATGTTAAGATCACTCCAGCATCACTTCCAGTGTGGTGTTCTCATTGACTCCTTAGCCTTCAGTAACCTGCTCTTGCCTTTATACTCCCATAGCTCCTGCTCCCAGTTTTATAGTTTTCTATCTACCAAAATCTCTCAGTCAAGGTTCTCCTTAAAGCGGGGAGAGAGATCTCATTTTTCTCGTTTCCCTCATATGTTCTAGTGACCAATAGGCACTTAATAAACACCTCCTGGGTTTTATGTTCCAAGGTGATGTTTCTAAGAAATTGAAGTGATCTGACTGTATGCCATAGAGCAGGGGTCCCCAACTTCTGGGGCCAAGGTAAGCAGCAGGCAGGTGAGCAAGCAAGCAAAGCTTCATCCATATTTATAGCTGCTCCACATAGCTTGAATTACCACCTGAGCTGACCTCCTGTGAGATCAGCTGCAGCATTAGATTCTCATAGGAACGCTCAAGAACCTGCTGCGAACTATGCATGGGAGGGATCTAGGTTTTTATGAGAATCATCCTGAAACCCTCCCCCACCCCTCGTCATTACCCAGGCTGTGGAAAAGTTGTCTTCCAGGGAACCAATCTGTGGTGCTAAAAAGGTTGGGGTTAGGGTTGGAGAGAACTGCCATAGAGAACTTGGGCAGCAATAATGACTAAATTCATGACTGTGGTTTATTCTGGTTGCAGAATTTGCATGAAAAAGAAAGAGGTTTCCAGCCTGTGGGAAACTGTGAGCTGGTGAGGGGTGGGTGTAATCAGGTGGGGCAGGCATGGGATCTCTCTGGCAGAGCTATATGTGGTTTGTATGGTTGATCCTGAAAAACACCAAGGTCAGTCTCTTGACGTTATTCATAACTCTATGGATATTTCAATATGCTATATCAATCTGCTTCATGAAGTCCTCCACAGATAAGGACTGATGATAGATAAGTCCCCGGAATTGTCAACTGGGCTAGTGTTAAGAGACAGGCTTGCAAATTATCTGCTAAGAAATGACCTTGAGTTCCAAGAGTTAACATGAGAAAATATGGGCACTTGCTATAGACCTTATTAGACTCCAGTCTGTTTCCATGGGGCTGTTGCCAAGGTACATGCAGTAGAAATTTCTCCAAGATACTGTTTTACTCCCCTAAGGCCCTCTTCTTAGTTGACATTGAATCTATCTAAATCCGAGCAATTCAACTAATTTGTAGATTTTCTTCTGACTAGTGGGAATATTTGTCTATTCTTACTAAAACCCATTGACCTCGGTCATCCTCACTAGAGGATTCCCAAGGTCTCAAAGGAAGGGGCCTAGGTTAAAGAGAAAACACATGACTTTTTAAATACTTGCTTTATGAAACCCAAATTGAGACAGATGATAAAGGACATTCTTTCTGATGGCCGAGTTTATATTTATTATGGAAAACTTTTCGAGAGTATGAGTACCAAATCACATTTTGTTACAACTTCAATGGATCATTTTATAAGAATAGAATTCATAAAATTGTAATTCTTCTGGGAAATAGGAGACCTGTGGTCATCATCGTATACAGAGAGTACTGGGGGAAAAAACCATCAGGGCTCATTCATTCATTCTCTGAAGGTTTATATGGCTCACAGTAGACCTTGCTATTCCTCAAACACATGGAATGGGCAACTTTCTGGAGGGCTTGGGCTTGTTGTTCTGCCTGGAAGGTTCTCCTAAGCTGACTTCCTTTCTCCATTCACATCTCTGCTCAAGTGCCACCTGCTGAGATCGCCTTTCCTGGTCCCTTTAACCTATAAGATCATCCCTCTTCACATTCTATTTTCCTTGTTTTTTTCTTTTTTTTAAATTAGTTTTTCTCTTTTTAAATTTTCTTTTCTCAGTATCTTTTTCTCCATTTAAAAAAATTTTGTTTATTTTTGTGTATATTTCCTTTCCTTTCTTTATTTCTCTTCAAAACCCTTGTGTTATACACTTAGCTACTGCCAGTCTTCCTTCTAGAAAGGAGTTCAGATAGCTGGGACATTGATGTGTTCATTGCTGTATTCCTAGCAGTTAGGACTGTGCCTACTGGAAGTTCAGAAAAGCATAAAATTTAAAAGGGACACTGGTAACCTCCAAAGGGTAGCCTTAAAAGAGTAACTTAAAAGTCAAACCGCCACATTCAGCACTTCCTGGCCCTCAACAAGTTTCTGTAGTGAGAGGAGTTGTTAGGAGAGACTGGCAGTTCTTGAAGTGTATAGAGCCACCCACATCACTGCATAGTTGGACTAGTGTCCAAAGGCCCTCTTAACTAAAAATATCACCCTCCACTTCTCCCTCTCATTCCCACGATGCCTGAAATTCCAGAGAGTAGTTCCCAGGAATTATAATCATTTTGACTGTGTTAAGACATAGGGCCATTTGGGAGGGCCAACAAATAATTGGGGCTTTGTTGAACTGGTCATCCAGTCAGGACTCACAGCCAGTTGTAGGAAGGTCTCAAGTCTGGTTCCCCTGGGACAGGAAAATCTGGGATTAGTGAGTCATCCTTGACACAAGAGGGCGGGAGAGAGCAATGGTGAGCCTGGTGAGGAGCCTGAAACAGAGCCTGGGATGGGGAAGGGCCTCTGCTTCTGAACAGCTGGGCAGTCTAAGGCAGAGAGGCTTCCTGCTTGACAGGTCAGAGGGAAATTCTTGGGCCCTCTACTTATGGATTCTAAGGATGATATTGGACAATTTTCATCATCTCTCTGAACCCATTCCTATCTGTGAAATGGGAATTTTAAGAAAGTGAAAAGTGTTAGTCAGTTAGTTATGTCCAACTCTTTGCAGCCCCATAGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGACAAGAATACTGGAGTGGGTAGCCATTCCTTCTCCAGGGGATCTTCCAACCCAGGAATCAAATCCGGGTTCCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGACTGGCTACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGTGGAGCCTGGTGGGCTACAGTTCATGGGATCATGAAGAGTTGGGCACAACTGAGTGACTGAGCACACACACACACACACATAAAAGGTTGTATTGAGAAGTAAATATAATTCATGTTTATCCAAGACTTAGCATGGTAGCTATCACATGGTTTGCACTCAAGAAATAAGCGTGGTTCTGAGGGTTATGACTCAGATTTCACTGTGCTCCATGGTGCATGGAAGGCCTAACTTCATAGCGGGTTTTCCATCTCCTCCTTGTGGCATTTCTGGATCCCTTCATGGAAGACCAGCATGTCTCTCTTAGTTGCTGGAACATTCCATTGGTGCCTCTTTTGTGGCACTTACTGCTTGCTGCCATATGTCCCTGTATTGTATTTATTTTTGTCACATTCTTTGGCTCTCCAATAGGCTTCCCTGATGTCTCAGCTGGTAAAGAATCCGCCTGCAATATGGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAGGGCTACCCACTCCAGTATTCTGGCTTGGAGAATTCCATGGACTGTATAGTCCATGGGGTTGCAAAGAGTTGGACACGACTGAGCGCCTTTCACTTTCATTTTCACTTTGGCTCTGCAATAATACTGTAAATTCCTGGAGGAAAAGAACTGGTGTCTGATCTGTCTTTCCCTTCCTGACATTGCCTCACAATTCCTCTTACATGGTAGAAACTCAAATATCAATTGCCCTCATGGATGACTATCTGAAAATACGTTAGCAGTTATTGTCATTTCCACAGCCTTTTGTCAAAATGGTCCAGCTAGTTCATCTACAGGCTAAAATGAACATAATTTAAGATGTAGAGTCACCACTATATTTGGTCTGATCGCTGTTCAGTTGTGTTGTTCAGGCTTTTCAGCAACGTCTATCAGAGGCTGTTGGGACAGAGCTGCCTCTTTGAGAAGCAGCTTGACTGGCCTAGACAGAAGACCAAATTCAAAATTGTAGATTTCAGTCCACTAAGTGGATTGATGCTGATAATCTGTTCATGGAAAGGGAGAGAAAAACCCAATTTGTAATTATTGGAACAAGAAGAAAGAATCAGAAGGTCAGAATGAATCATATGAAATTGCCATTTTGGTAGATCAAAACTAGTCCAATAGAGGTCTTTTCAAATGATTCAACCTTCATAGTTATATGGAAATCTAATCATCCAGACAGCATATCCATAGGAATATAACCTATCACAAGATCTAATGTATCATGAGAGAAAGAGTACCATGAATTTTCTCCTGTTTTTTCTGTTCTGAGTTACTGACTTAACATCTGTCAACCAACTTCCCATCACAGCTGAGGTAACATTTTAGAAGCCCAAGTAAGGAGCAAGCATGGCTCATAGCTATGGATACGCCAGATGGGTAACTGGGTGCGTGGCAGAGGAAGGGGACCAGGCTGTGATGTCCTGGAGCAGAGCCACAGCTTGACTGCACGAGGCTGGATGGGCAGGCGACTGGCAGATGGAGGCCAGCCTTTAGGGGCAGAGCACCCTGTGAAGTCAGGGCTGGCTGGTGGACAAAAACTGCTCCGAAACCAGGAACAAGACTCGGAGGTTGGAGAAAAGGGCATTCCACTGTCCTTGGACAGCTGGCAACAGGCCATGTGTCTCTCGGTTGACCTCTAAACTCTGGATTATGCAAATCTTTATGAAGTTACATTTTTGTAAGAAAGTGAAATTACATGGATTGTAGATATTATGTATAGAGATGATGTCAGTGATACTCATTTAGAATAAATAACCCCATTGAGCAGTAATACCCCAAGTTGGTAATACTATTTTTTTTGTTTGTTTGTTGGCATCTACCAGGCACGCAGACCCCAGATGTCATAGAAGGAAACCCAGTTTCCGAGGGAAGTTCTATATGTCAATGACATAGTCTCTTTTTAAAATCCTTCCTCCCTCTCTCTCATTCTTTGTCTGGGATTTGATTTCTATGAGGCTTTTTGCTATCGGAAGCGTGGAAGCAATTCCTACCTATTTCTTTTCCCCTCACCCCCTCAGCTCCAGCCCCAGGCCTCACTGCTTTTCCCAGAATGTGCCAGGTTGACCTTTCCTTGGGGCCTTTGTACAAAATCCCCCTGCCTGGACCGCAGTCCCCAGACATCTGCCTGGCTCCCTTGTTCCCTGCAGGCACTTGTTCAAAGTCTTCTCAGACCAGCTTTCCCTAACTTCCGCTGTTTAGAATTACATGGCTTAGTCCTCTTTGCACCTTTATTTTTATCCACTGCACTTTTTAAATGACGGGTTATATGTATTTATTTTATATTGTATGCCTTCCTTGTGTCCTCCCATTAGGATGTAGGCTCCAGAAGGGCAGACATTTTCACCTGTTTTGTATGTAATGTGTTCAGAGTCCAGAACAGCGCCTAGCACGGAGAAGGTACTCACATGTTTGTTGAGTACTCAGATGGAGACTAAGAAAGTGTGAGAAAATGTTCATGACTTGCTCTTCCTTTTGCCTTCATCTTTGAGCAATTGCATAATCTGCAGAGGAACCACAAAACCTTTCCAGATGTGGAGAAATAGAACCGTTTGCAAAATCGGTTGCAGATTCCACCATATTACACCTTTTGCAGACTCTAGGCTGGATGTAAATTAGATTTCAGCTCTGCTTCCCATTCACCAGCTTGCACCTTATGAAAAGTATTTTTTAAAGTATAAGTTCCTGGGAATTCCCTGGGAATTATAATTTAATTTTATAAAACTAAAATTTTATTTTATTTTATTAAAATTTCTATTTTAAAGTTTAAGTCCAGTGGTTAGGACTTGGAGCTCTCACTGCTGGGGTCCTGGGTTGGACCCCTGGTCAGGGAACTAAGATACCCATGTGGTGAGGCCAAAAATGTTTTTAAAATAAAGCATAAGTTTGAAGTTAAATTGATTCGCATTCATTCCAGCATAATTAATTATTTTGAAGCATAAAAATAGTGTTTTGCAAACAATTTACAAATAGCTACAAATATTTAAGTTCCAACCATGCACTAGGCTCCCTGTGCTAGGCCTTGTAGGAAATACAGAAGGAAGAAGCTAAATCCCAGTTCTTAAGTATCTTAGGACTGAGAAGTGGGTAGAAAGTGAACAAAGATAAGAGAATAGAAGGCAGAATATGGAACTATTGTTTCAGGGATAGAGTTTATGCCTCTGCTTATCCTCACTCTTGTTTTCATAAGAACCAACACTTTTGTGATGGTCTTATGTCCAGTCTCAGAGGTTTTCACTGGGTTGCCTCCCCATTCCAGCCCCCACCGCCACGGGAAGGGAGAGGGGTGGGGAATAAAAGGTCAAAGCAGTACGGAGGGACCATGGGGCCTTTATGCTCCGCCCAGGCCTGGGGGAGAACAGCCTCCATCTTGCTCAGCAGCACAGCTGACATGCAGGATACTACCTCCAGGGAGGGGGCCCATGGGACATGGGTGCTGCCCAAAACTGCTCCCACCCCAGCTGGAGGAGCAGAGAGAAAGAAAACTGAGAAAGAAAGAAAGAAAACTGGAGGATCCTGCAGGTTACAGAACTGGTGCAATTGGTTGGAAGGGGCCGGGGCTGAGTAGGCCTGATTCGGCCTCAGGGAATCCTGCTGCTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCATGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTGAGGTGAGGGTTCCCTGGCCTTGGGGAGGCCTGTTCTAAAAGACAGTCTGCACAGTGTGGATTCTTTCATAAACAGCTTTAGAAAAAGTTATAGCCAGACGTGCATGCACAAAAATGAACCCAACCATTTTGTGAACTGTTTTGTTTGTTTGTTTGTTTTGACTTTTTTCTTAAACATATATTTAAAATGAAGAGGAAGGAGTAAACTTCATTAAGTTGCATTCAACCTGGGGGTCAGCCTGACCCCCATCTGAGGTTCTCCACAGCGACCAAGGCCGTGCCTGAAGATCTGAGCCTTCACAAAGGGGACAACAGTGGGATGAGCTACCTGGAAAAAACTGGGGGAAATGGTGTCTAGGGCAGCTCTTAGACACATACAAGAGAAGCCATGGATGTGGCTCCACCTTTTAGAGGGCCCTGCTCCAACAACTCCCTTATCCACATCCTTCCCCACAGAGCAAGCGTCCATGAGGCCAAGTGGAGGTGCTTGCCCTGGGTCTGCACCTCACCACAGGTATCTGGAACCTGCAGCTCTCTGCCCAGATGACTCAGGGCTGCTTGAATTTACATGGGCCTCTTCCTTTGGTCCATCCTCCTAAGGATGGTAAGGCTTCTGCTAAGTCCAAGACGTGGCAAAGAGGCAGTGTTTATAGATGGAGCCTGAATGAGAGAGCACCAGGCCCTTAGCAGAGCTGGGGGGACTTGGGGAAGGTAGAGAAGGAGGTGGGTCTCAGGCTAAGGCCCAGGGGCTGGAGGATGGAGGCTAGCTTTCTCTGTGCCACCACCAAGTCAGATTTTTGAATTTGAACTTGGGCTTTGAGGTCATACGAAGGGATATTTGTCAAGGTAGAGAGAGTAGAACATACTAAACAGTTCGTTAGCTTGATTTATCCCTGTAAGATATTTGGGCCTCTGGCATGTGGGCCTCCTCTGATCTCTTGACACAGCCTTGCAAATATCAGGGCTGGTCTTGGGGGCTGTCTTTAGAGATGCGTTTTGCTGACTGGGGAGGATGTTGATGGGTCAGGATGGCAGGAGATAACAAGATAAAAGGCCTAGAGATGGGCATTTCCAGACAACACTGAGCAGAGCCTGGGAAGAAAGCCACTGTGCTGCATGTCTTCTCCCCGCCAGGTTTTGGCAGGACATGGAGGACCTTGGTTTCCTTGGTCTCAGCTCTGCTTACCTCTTAGGTGTCATTTCTCCTCTCCTCTGTGATGCTTGCTGAGCTCCAGCATCCTAGGCCACTGGTTCCCGCAGTGAGCCCCGCTCTCCCAGCCTCTGTCTGTACAAATTGTTTTCTGTTCTGCTCCTACTGTCTGTCCTCTCTCCTATGTCCCTGCTCAGCCTCATTCCCTGCTCACCTCCTCCCCGTCCCAGGATCTCCCCTAAGACGTATCTTCTCTAGAAAGTCTTCCCTGAAGGCCCAGGCCCTGCGCTGACCCCATTATGACACCATCCCATTCCTTCCAGACTGCGCTGTCTCCACTAGACGCGGAGCTTCCTGGTTGACACGAGAGAAGTTCAGTGCAAAAGCAGCAGAGAAAGTCATGCAGTTTTATTTCATCTTAGCCGGCTTTTGACCATTAGGGACTATGATAATTCTTACAGTGAGGTTTGGCTAGAAGAAAAAAGTAGAGAAAGAATAGGAAAATGGTTTTCAGAGTTGGTTTGATATAATAGACAAAGCATTTTTAAAATTTTGCTTTTTAAAATTTGAAAATTAAATTTTTTAAGAAAAAATTTAAAATTTTCCTTGGGAGGCCTGAGTCTTTATGTGGGTTCTCACTGTGGGTCTGTCGAGCAGACTAACCAACCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGTGCATATGCATGCACAGCAGTGAGATAGGGGCCCTATTTTATCACCCTAGAGCCTCTCCTGGTGAAACCTGGGCGTTGGTTGTCAGGGTTTTCAAACCCTCAGAATCCCTCAGGGATAGATCTCCCTGGAGGGGCCAGTGAGTGGCCCTGGGCCCCTCCCCAAAAGACCAGAGCACTTTACTTCATCTACAAGTTGAGTTACGTGTAAAAATGTTCAACCTGAGGTTTTCAACCTCAACAAAAAAGGCTCCAAGTCTTGGCTAAAGCTCTGAAGTCCTTTCCAGGTCGAAGTTCCTGGGGTTCTGTGATTCCATAAGAGGAAGTAGCAGCTGGGTCCCCGAAGGAATGGGTGCAAATGAACACGGAGGACTATCATGAGGTTTAGACGGAATCTAGCAGCTTATGGATCTGGATCAGCCGTGACCCTAAATATCTGCCTTCTCTGCCTCTCTCGCAGGGACTCACTCTCTGAGATATTTTCGCCTGGGCATTTCAGAGCCTGGCTATGGGATCCCTGAATTTATTTCAGCCGGGTATGTGGATTCTCATCCCATCACCATGTACAACAGTGTGTCCCAGCTGAAGGAGCCGCGGGCCCTGTGGATGGAGGAAAACCTGGCACCTGATCACTGGGAGAGGTACACACAGCTGCTGCGGGGCTGGCAGCAGGCGTTCAAGGTGGAACTGAAGCAGCTGCAGCATCACTACAATCACTCAGGTGGTGAAGGCAGCAGGGATGAGCACATTCCATCCCTAGCCCCCAACCCGGTAGAGGCCCCTGGGCTGACAGTGGCTGTGAGCTGAGCTACATTCTTTTGGCAAAGCTCAGGCAATCTTGTCACTGGGGTTCAGTGCCTGCCATCTGTCCTGTGCCTCTTCCACATTGTCTGTTTCTTCCCCAGGACCCCATGTGCCCCCATGTCCCTGTCCCATCTTCATTCAGGCTGCTGACCTGCATCTCCTCCTAAATCTAGCCGTTGTGTGTCTTATTTCCAGGCCTAATGAGGTGCTTGCTTATGGGCAATGACTTACTACATTAACTTTCCCTGGGGATATTTCTGGCTCCTGGGTATCTCTCCCTCCTCCATTGCAGTAAAAAGTTTATCAGTTAGTTGTCCCCAATATAGGATAACTCCACAAGGCAGGAATTATCATACTCCTTTGACATGCAGTAGGTACTCTGTAGATACCTATGTATAGGTGGGCTTATATCACAGGAACTTTCTGGAGACTCAGTGATGCCATGCCAGGCCTGTGCAGTAATGTATTCTGGGGTAGAAGATGCTTCCAGCCATGCCCCTAGTCAGATCATCCGGGTACCCACCTTTACATCCCCATGTCAACCCCTCCCTTCCTGCCATTCATGTGTCTTCCAG
Seq C2 exon
GGTTTCACACTTACCAGAGAATGATTGGCTGTGAGTTACTGGAGGATGGAAGCATCACGGGATTTCTCCAATATGCATATGATGGACAGGATTTCCTTATCTTCAATAAAGATACCCTGTCCTGGATGGCCATGGATAATGTGGCTGACATCATCAGGCGGGTATGGGAGGCCAATCGGCATGAGTTACAATATCAGAAGAATTGGCTGGAAGAAGAATGCATTGCTTGGTTAAAGAGATTCCTGGAGTATGGGAAAGATGCCTTACAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009924:ENSBTAT00000064417:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(11.0=57.9)
A:
NA
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development