BtaINT0095708 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011865 | MTA2
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41643956-41644877:-
Coord C1 exon
chr29:41644782-41644877
Coord A exon
chr29:41644024-41644781
Coord C2 exon
chr29:41643956-41644023
Length
758 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCCCCACCCCCTCCTACAGATT
3' ss Score
9.46
Exon sequences
Seq C1 exon
CTTCGAGTCCTGCCCTCGGGAGCCTTCCGGACCCCTTTGTGCGGCCGGAGGCGGCGGCGGGAACGGCCATGGCGGCCAACATGTACCGAGTGGGAG
Seq A exon
GTGAGTACCGGGCGTTAGGGGCTTCGGGGCTTGGGGCGGGAGAGGTTGGGCGCTGGGGTCAGAAAGGCTCGGCTCCCAGCGGCGCGGGGAACCGCGTCTAGGGCGGCGTGGTCCAGAGCGCGGACCGGAACCGGAACCGGGAGCATGGGGAGCGAGAGCGCGGGGATCGCGACGCGGCCGGGCTCCAAGACTCCCGGGGAGGCTGCGGGCGGCCCGACGTCACTCTCAGGGCAGCGTCTGGGCCGCCGGGGTCGTAAAGCGGGATTGCGAAAGTGGTTCCAAAGGGGCTGACAGGGCAGGCAGGGGGCGCGAAAGGCCGGGGCGACTGCTTGGCCACCAACGGGGGAGCGGCCGGGAGGTTTCCTCTTCCCAGGCGTTATTGTGCGCCTCGGTTCGCAAAGGTGGGGGCCCTGTACAAAGTGAACAATTGCTCTCTTGACCGAGACTGGGATGCAACTCCATCGCTGAGTTGTGGGGACTGCTGAGCAGGGGAAGCCCCTGCTTCTCTTGTCTCCTCCTTAAGGCTCACTTTTGAGCGGAGGATCTGATTTAAGAACTGGGTGATTAGGGTTGGAGGGTGGAACGTCTCTCCATTATTTTCTGCTAGTCTGTACACTTGCACATTTCAGCGTCCTCTCTACCTAGACCCTTATCTCCTTTTGGTCTACTCAGGCCTCCTTTCGCTCCTCCCACTCTGGTGCTGGACTCTCCCATCTACTCCTCTGATCTTCCCGGTTCTTCCCCACCCCCTCCTACAG
Seq C2 exon
ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGAAGGATTGAAGAGCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865:ENSBTAT00000015748:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (disopred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(4.3=60.0)
A:
NA
C2:
PF0142613=BAH=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]