BtaINT0096535 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51402210-51402501:-
Coord C1 exon
chr29:51402391-51402501
Coord A exon
chr29:51402280-51402390
Coord C2 exon
chr29:51402210-51402279
Length
111 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GCCCCGCCTCCTCTCGCCAGACC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTATGTGCAGACAGCGCGCTCACTGTGCTGGCCGAGCTGCGGAAGTGCGGCCTGACCGACAACGAGAACTGCCTCAAAACAGTGACACTGAGCTTGAATGGAGGGGACACG
Seq A exon
GTGAGTGAGGCCCCGGCCGGGGGCTGGGAGGGGTTGGGGCAGGCGGTCCCCCGCTGGGGCGTCAGGCTGGCCCCTCCCCTCGCTGACCGCAGCCCCGCCTCCTCTCGCCAG
Seq C2 exon
ACCGTCCAGATCCAGGCCAACGGCGGGGTGTTCGTGAACTCCATCTACTCCCAGCTGCCCATGTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.2=100)
A:
NA
C2:
PF0009420=VWD=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGCGCGCTCACTG
R:
CTACAGACATGGGCAGCTGG
Band lengths:
174-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]