BtaINT0096539 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51400860-51401458:-
Coord C1 exon
chr29:51401294-51401458
Coord A exon
chr29:51400955-51401293
Coord C2 exon
chr29:51400860-51400954
Length
339 bp
Sequences
Splice sites
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
3' ss Seq
TGCGCCCCCCGCCCGCCCAGAGA
3' ss Score
5.68
Exon sequences
Seq C1 exon
GCCTGTGTGGGAACTTCAACCAGAACCAGGCCGACGACTTCCGGACCGTCAGTGGCGTGGTGGAGGCCACGGCTGCGGCCTTCGCCAACACCTGGAAGACCCAGGCCGCCTGCCCCAACGTCAAGAACAGCTTCGAGGACCCGTGCTCACTCAGCGTGGAGAACG
Seq A exon
GTGTGTGTCCAGCAGCCCCGGGGCCCTTGGATTACCCCGGGTCTGGGCCTGGGAGCTGTGAGGCTGGGGCTGGGGGTGACCAGGTAGGGGGATGCAGGGTCCTTGGCAGGCTGGGGGCTCATCCCCGGGAAGGCGCCTGCTGCCCTGTAAGCAGTGCCCACTTAGCATAGCCAGTGAGCCTGTAATCAGTGTCCCTGGGGGAGTCACTGGCCACAGAGCCTGGGGGCGCCAAGCGGGGCTGGGCGGGTGGACAGGTGCAGGGGAGGCAGTGTGGGAGGAAGGCTGGTGAGCGCTGAGCCGTGCCCATGACCGTCCGCCATGCGCCCCCCGCCCGCCCAG
Seq C2 exon
AGAACTACGCCCAACACTGGTGTTCCCTGCTGACCCGCCCTGCCGGGCCCTTCTCGCCCTGCCACTCCGTCATCAGCCCCGGGCCCTTCCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.8=33.9),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(41.3=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTGGGAACTTCAACCA
R:
CCGGGGCTGATGACGGAG
Band lengths:
246-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]