BtaINT0096546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51459423-51460078:-
Coord C1 exon
chr29:51459817-51460078
Coord A exon
chr29:51459538-51459816
Coord C2 exon
chr29:51459423-51459537
Length
279 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GCCAGGCCCTCTCCCTGCAGAAT
3' ss Score
9.76
Exon sequences
Seq C1 exon
CCCTGAACGCGGCCCACGGCGGGCGGGCGTGCAGCACGTGGGGCGACTTCCACTACAAGACCTTCGACGGCGACGTCTTCCGCTTCCCCGGGCTGTGCAACTATGTCTTCTCCGCGCACTGCGGCTCCGCCTACGAGGACTTCAACCTGCAGCTCCGCCGCGGCCCCGGGCCCAACGGCGTTGCGCCCAGCAGGGTGACCATGAAGCTGGATGGCCTGGTCGTCAGGCTGACCAAGGGCTCCGTCCAGGTCAACGGCCGCCC
Seq A exon
GTGAGTCTGGGGCCCGGTGGCGCGTGTGCTCCCGGGACCACGCAGGGTGGCTGCAGGCCCCCAGGCCCCCACGCTCTGCCCCCGTCTCTCCTGGGGGCTCAGGCTCTGGCTCTGCCCCCAGACGCGGCCCCTCCCTTGTGCTGCTGACGCTCGAGCTCCGTGCTCTTGGGTCTTGGTGACCTCGTTGGGATGTGACCTGAGGGGCCTCCCCACCTGTCCTGACCTCTGCTGCCCAGGCCCTTGGACCCCATGTGCCTCAGCCAGGCCCTCTCCCTGCAG
Seq C2 exon
AATTCAGCTGCCCTTCAGCCAGTCTGGAGTCCTCATTGAGCAGAGCAACAGCAATCTGAAGGTGGTGGCCAAGCTGGGCCTGGTCTTCATGTGGAACCAGGACGACAGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.4=87.5)
A:
NA
C2:
PF0009420=VWD=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGACTTCCACTACAAGACC
R:
TTGGCCACCACCTTCAGATTG
Band lengths:
293-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]