BtaINT0096554 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51393917-51394233:-
Coord C1 exon
chr29:51394190-51394233
Coord A exon
chr29:51394115-51394189
Coord C2 exon
chr29:51393917-51394114
Length
75 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CTGTACTTGTCCGTCTTTAGCCT
3' ss Score
7.33
Exon sequences
Seq C1 exon
TGACTGCACCTCCAGCGGCCTCCAGTGCACTCACAGCCCCGAGG
Seq A exon
GTAAGGGGGACCCGGTTGGTTTGGGGGCCTAGGAGCTGGGGGCTCAGACTGAGCCCTGTACTTGTCCGTCTTTAG
Seq C2 exon
CCTGTACGTGCACCTACGAGGGCAGGACCTATGCCTATGGGGATGTCATCTACAACACGACCGATGGGCTGGGCGCCTGCCTGATCGCCATCTGCAGAGACAATGGGACCATCGTCCGGAGGGCCGTGGAGTGCCCCGGAACCCTGTTTAAAACGCCCTTCACCTTCACCAGCACCGCAGCTCCGCCCTCCACCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTGCACTCACAGCC
R:
TTTTAAACAGGGTTCCGGGGC
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]