BtaINT0096580 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51371105-51371367:-
Coord C1 exon
chr29:51371281-51371367
Coord A exon
chr29:51371165-51371280
Coord C2 exon
chr29:51371105-51371164
Length
116 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTCCCCCTTTCATTCCAGCTC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGCTTTGAGTACTCCACGGTGGCCGGGCAGTGCTGTGGGGAGTGCGTGCAGACCGCCTGCCTCGCACCGGACGGTCAGCTGGTCCAG
Seq A exon
GTAAGGGGACACTCAGTCTCGACCCTTGCCCTGCAGAGACCCTCCTGACCAGCTCCTCTTCATCCACCAGGTAATCCCCAGCCCGGCCCCCAACCATTTTCCCCCTTTCATTCCAG
Seq C2 exon
CTCAACGAGACCTGGGTCAACAGCCTCGTGGACAACTGCACGGAGTACCACTGCCAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:73
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(22.2=48.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAGTACTCCACGGTGG
R:
GGCCTGGCAGTGGTACTCC
Band lengths:
146-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]