BtaINT0096655 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5614589-5614926:-
Coord C1 exon
chr7:5614828-5614926
Coord A exon
chr7:5614686-5614827
Coord C2 exon
chr7:5614589-5614685
Length
142 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
GACCCCGACCCCGACCCCAGAAT
3' ss Score
4.2
Exon sequences
Seq C1 exon
ATCTCCTGCACTGTGGAGGGGACGCCCGCCAGCTTCGGCAAGACTTTCGCTCAGAAATCTGGCTACTTCCTGTGCCTCAATCCTTTGGGCAGCCTAGAG
Seq A exon
GTAGGGAGCTCCCATCCTCGGAACCCCCCGCCCTTCCCACTTCCCCTGTCCATTCGCGGAGCATTATGCCCGGGACACAGTCCCTGCTGCTGAGTGATTCTCGCTGTTTCCCCCCGCGCCGCGACCCCGACCCCGACCCCAG
Seq C2 exon
AATCCACAGGAGAACGTGGTGGTCGACATCCAGATCCTAGTGGACAAGAGCCCCCTCCCGCCGGGATTCTCACCAGTCTGCGACCCCCTGGACTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914:ENSBTAT00000005111:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
NA
C2:
PF102404=DUF2464=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTGTGGAGGGGACG
R:
GAGTCCAGGGGGTCGCAG
Band lengths:
189-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]