BtaINT0097347 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21352410-21352694:+
Coord C1 exon
chr10:21352410-21352566
Coord A exon
chr10:21352567-21352662
Coord C2 exon
chr10:21352663-21352694
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCTCCTCTTTTCTCTTCCAGATC
3' ss Score
14.19
Exon sequences
Seq C1 exon
ACCTACTCAGGCCTCTTCTGCGTCACCGTCAACCCCTACAAGTGGCTGCCCGTGTACAATGCCGAGGTGGTGGCCGCCTACCGGGGCAAGAAGAGGAGCGAGGCTCCTCCCCACATCTTTTCCATCTCCGACAACGCCTACCAGTACATGCTGACAG
Seq A exon
GTGGGCTGGCGGCCCTGACATGTGGCCCCTCAGCCCGACACCATAGACTGAGGCCCTGAGCCCTGACCCCTCTGCCTCTCCTCTTTTCTCTTCCAG
Seq C2 exon
ATCGGGAAAACCAGTCCATCCTCATCACGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCTGCGTCACCGTCAAC
R:
AGGATGGACTGGTTTTCCCGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development