BtaINT0097349 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21353401-21354198:+
Coord C1 exon
chr10:21353401-21353493
Coord A exon
chr10:21353494-21354134
Coord C2 exon
chr10:21354135-21354198
Length
641 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
TTTGTCCCATCTACCCCCAGGGA
3' ss Score
11.6
Exon sequences
Seq C1 exon
GGCACCCTGGAGGACCAGATCATCCAGGCCAACCCCGCCCTGGAGGCCTTCGGCAACGCCAAGACCGTCAGGAATGACAACTCCTCCCGCTTC
Seq A exon
GTGAGTGCACCTGACCACTGCCCACAGGCTTCATGCAGCATTGATGAAAAAAGGGGGTGGAGGTGCCGTTTTGCCAACAGTCTCCACACGTGGCTGACCATCCTGCATTTGGTTTTGGGATATCAAGTAACACACATGCACACTCAAACCCTCCCTACTCAACCTGGCCCCTGAGTTCTGAGAACTCAAGAAAAGAGACCCAGAGCCACCAGAGCTGTTCGTTGCAGAACCAAGTCATCGGGCTGACTTGGGTCACATTCTATATTTTTTTTATGACTGTTCCCAAAGCTCTTCCACGCTGTAAGTGGAAGAGCTGGAAGGAGGACAGCAGGGCTTTTGAGCCAATTCCCCAGCCTTCCATCTGTCTAGCAAGTTCCCAACCCTCTCTGAGCCCCAGGTCCTTCATCTGTGAGACCGAGGTAGTAGTCTCTACCTTGCTGGTTATTGGGAGGATGATGTGAGAGCATATCAGAGGCACAAACAGGATGCATTCTATTTTGTTTATGGTACTAAACTGGGGCTCCAGGGAAATCATTTACATTTCCAAAACCATCCAGGGCATTCTGGATTGCACTGAGGTCCAGGATTTCCATCTGTCTCTTCTAGCCCCCTCCCTCACTCTTTGTCCCATCTACCCCCAG
Seq C2 exon
GGAAAATTCATCAGGATCCACTTTGGAGCCACTGGAAAGCTGGCTTCTGCAGACATAGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development