BtaINT0097873 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13181997-13183722:-
Coord C1 exon
chr19:13183574-13183722
Coord A exon
chr19:13182111-13183573
Coord C2 exon
chr19:13181997-13182110
Length
1463 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCACCCCTTGATGTTTCAGACA
3' ss Score
8.77
Exon sequences
Seq C1 exon
TCCTGAGGTGTCTGCAGGCCCGGTACATGGCCGACACGTTCTACACCAACGCCGGCTGCACCCTGGTGGCTATGAACCCCTTCAAGCCTGTCCCTCAGCTCTACTCGCCCGAGCTGATGCGAGAGTACCACGCTGCTTCTCAGCCCCAG
Seq A exon
GTGAGACCCCCGCTTCCCAGGGAATCAGGGCTCCCCCTCCTCCCCGCGGGCACCTGGCAGCTTCGCTGTCCTTATCCGTGTCATTGTCAGCTGGGCTGTCATTCAGAGACTGCTGGGGCTGTGACCTTCCCACCAGAAGCTCACAGAAGTTTGGACACGTGCCAGGAGGTGCAAAATGAGAGAGAAAGCAGTATTTGCTTAACTGATTTTGGATCCTAAAATAGGGACATGGACAGATTTTTTTTTTTTTTCTTGTTTGTGAATTTATTAGTTGGAAAGAATTTCCCAAGGCATATTTGTGTATTTAAAAACCACTTTTTGGGGAAAAGAATAAAATTACGTGCAGTTAGGATTGCCTTGGAAAATTCAGCACATGTTCGTCTCCACTGATTGGGAGGAGGGGTCTCTTTTTACGCAAGTGGGGATGAAGCTGGTACAGGCAGGGAACACCCCAGAGGATGTTAGCGTGCAGGGAGAAGCCAGAGCAAACTTGGCGGCAGGAGCAGGGTGTTGTGGAGAGAAGCACAGATGAGGGTGGGAAGGTGAGCTATTCCAGGGCTGTCATCAGAGGGTCTGCACCGCAGCTGAGAGTCCACAGAGCTGCTTCATCTGGGTGGGAGTGGGGCTGTGAACAGAGCCCGCCGTGGGGATGAAGTTGGGGGAGTTGGGTTAAGGAAGGTGAGACCAGCGGCTGAATGGCTGGAGGCTTTGTAACTCTCCAGGTGAGAAGTGGGTGGGGTGAGGGCCTAGAGAGAGATGGTTCTGACAGCCTCCAGAATGATGCCCTCTCCCTTCAGGAAGCTGTAGGCAAGCGGTCATTGCTGGCAGAGCCGCACTGGGTCTGCATGGACTAACCCGGCTCATCCAGGGTTCGTGTCTGGGTGGGCAGCCAGGGAGGTCTGGCCTGAGAGCCGGTCTTACCGACTGCCTCCTCAAAGGCAAAGCCGCGTGATGGTCCCCTCTGTTCCCTCAGTGCCCAGCTTGATGCCCAGCACACTGAAAACAATTAATCCTTGTTGATCGAAAGGAGAACAGTAACATTGGAATCCAAATCACACAGATGCCTTTATTTGCTGAGTGGCCTTGAGAAGGTTATTTAACCCATATGAACCTCCAGTTTGTCATCTATAAAATAGGGTTACTTCTTAGGCAATAACTGGTAAGAAAGTTCTTGCAAATTGTAATAACATAAAATAAAAAAAGTAGCAGAATAAAACTATTGACATAAGATGGGAGGATAACGTGTTAATGTCATAAACTGGTCAAGGCCAGCACTGCTTCCAAACTGAGAGAAGATGAATGGGTCACGCCTGCAGCTGGCCTCACGTTGTTATGCCAAGAAGTTTTTCTAGAGGAAGCCTCCACCGCTGCTGTGGACAGGCTCCCCGTCGCAGCCATCGCTGGATCAACCCCTCCTCGAAGACGGGTTTGCTGCCATGACCTTTCACCCCTTGATGTTTCAG
Seq C2 exon
ACACTGAAGCCCCACATCTTCACTGTGGGCGAACAGACCTACAGGAATGTCAAGAGCCTGATCGAGCCGGTCAACCAGTCTGTTGTTGTCAGTGGAGAGAGTGGCGCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(6.8=97.6)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGGTGTCTGCAGGC
R:
CTTTCCAGCGCCACTCTCTC
Band lengths:
263-1726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]