BtaINT0098190 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58220629-58221143:+
Coord C1 exon
chr10:58220629-58220712
Coord A exon
chr10:58220713-58221108
Coord C2 exon
chr10:58221109-58221143
Length
396 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GAGACAATCTAATTTTAAAGACA
3' ss Score
1.54
Exon sequences
Seq C1 exon
GTAGAGTATAAATGTGAAGGTTTCCTTGAGAAGAACAGAGATACCGTCTATGACATGCTGGTTGAAATCCTGAGAGCAAGCAAG
Seq A exon
GTTTGTAAAGTACTAAAGGGTAATTGATGTTATTCATTGTGTACTTGACATGGACCTAGATGTGTATCAAGAGAAAGAAACATGTGCATGTTACCTGTCTTGTAACAATAAATTGTAGCTTCTACATACAAAAAATCGTCCTCATTAGTATAGTGATGAGTATTTTATTTTGTTTTATTTTTATTTTTAGAGAGCTTTTTAAATTATAATTTAAAACTATTTTGTGCCAGTACAATATATTAATTTTACAAATCTAAAATTTTATCTACTCTTTAAGTATTTGCAAAAACCATACATCCTTCTTCAGCTTTATTGCACACTATAAGAAAATACTAATTTTTAAATTAGAAAATATAAAAATGCTTTCAATATAGAAGAGACAATCTAATTTTAAAG
Seq C2 exon
ACAATACTGTATAAGAATGTCTACCCAGAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development