BtaINT0100224 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018343 | NCR3
Description
natural cytotoxicity triggering receptor 3 precursor [Source:RefSeq peptide;Acc:NP_001035614]
Coordinates
chr23:27521474-27523278:+
Coord C1 exon
chr23:27521474-27521530
Coord A exon
chr23:27521531-27522933
Coord C2 exon
chr23:27522934-27523278
Length
1403 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
TGTCTTCTCTCTGCCCCCAGGAT
3' ss Score
13.35
Exon sequences
Seq C1 exon
GAACACCCTCCGACATGGCCCAGATGCTGTTGTTCATCTTTATCATCATCCGTCCAG
Seq A exon
GTGACGGGGCTTTCTCCCAGGAGCCTGAGGGGTGTGGGGCTGGGAGGAGGAAGGATGGGGAGGCTGGACACAGATGTCCCAGGGGAACAGACTGGGTGGGGGCTGAAAGCAGGGGGTCCCTCTGTAAAGCTGAAACCCGGTGCACTCCTCCAGTTTGCAGTTCCCTCCGTGTCACCCGCTGTGAGGGTCATTCCCCAGCTTCCATGCTAGAACTCTTTTCTTCCCAGTGAAAGTTAGTTGCTCACCTGTGTTCCACTCTTTGCGCGACCCCATGGACTGTAGCCCTCCAGGCTCGTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGGGGGTTGCCATTCCCTTCTTCAGGAGATCTTCCCGACCTGAGGATTGAACATGAGTCTCCCACATTGCAGGCAGATTTTTAACCATCTGAGCCACCAGGGAAGCCTTTTTCTTCCCAGCCAACTTCCTAACAAGATAAAGTCTAAAGAACCAGAAAAAAGGGCTTGAAGGAAGGGGTCAGATTTTTTTAAGGGGTCAGTTTTAATTCGATGAGTTTAATAAGCTTATTAAACTAGGCTTATTATCTAGGGTTTAGATATAATTAGGAGTTTAGGAATTTAATTAAATCTAAGTTAAGTTTCTTAATGAAACTGATTTTAATTATCCGATCTACTCATTAACTAAATGCAATGTGGACTCCAGACCTACAGCTTCAGCATCAGCAGGGACCTAGGGCAAATTCAAATATTTTATTCAGAACCACGGAATAAAATATTCCAGCAGTGGGGTTTGGGAATCTGGTTTAACAAACACTCCAGATGTTTCCAATGAGCTCTCAAGCTTGAGAATCACTGAAACAGAAGAATGAGTGGTAAATTTCATTAACTGGAGAATTTAATCAAGAATTTTAATAGTTGATGTAATTCATCAATTTACATGAATTCACTAGGGATCCCCATCAATTATAGCCATGGCTTTACCTGGAGATTTACTTAATGATCTTTAACAAAAAAACAGTAGTAAGATGGTATGGTGCGGAATGCTATCAGTACTAAAATAATACCTGGAATAATATAATTAATGATATTAGTTAACTAGGCAGCCACATTCATTAATGAGCTTCACTTTAACTGTGACAAGTTAAATTTCAGCAAAATGTTACTAGTGGACGGAGCTAGAGAATGATGGGAGAGGGTAAGAGTTGGTATGAAAAATAATTTGAAAAACTGTTTAATAAGCAATGTTAAGAAATTAGATTGGTAAAAAGGGTTTAATGGGGCATCTAAAGTACTTGTCCCTGGGGGCCCTCTGGGGGTGCGCATACAGCGGGGACATTCTACCACAAGCTCTCAGGTCTTTTCTCTCTGGAGTAACTGGGAAGGCGCTCCTCTGTGTCTTCTCTCTGCCCCCAG
Seq C2 exon
GATCTTGTGTTCTCTGGGTGTCCCAGCCCCCTGAAATCCGTACCCAGGAGGGGTCCCCCGCCTTCCTGCCCTGTTCCTTCAATGCCAGCCAAGGGAGTTTGGCCATTGGTTCTGTCACATGGTACCGGGACAAAGTGGCCCCAGGGATGGAGGTGAGGAATGAGACCGCAGAGTTCCAGGGCCGCCTGGCCCCTCTCCCCTCTTCCCGCTTCCTCTGTGACCACCAGGCTGAGCTGCACATCTGGGACACCCGAGGCCGTGACACTGGAGTCTACGTGTGCAGGGTGGAGGTGCTGGGCCTGGGTGTCGGAACAGGGAATGGGACCCTGCTGGTGGTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018343:ENSBTAT00000024407:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0768612=V-set=WD(100=94.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGATGCTGTTGTTCATC
R:
TCCCTGTTCCGACACCCAG
Band lengths:
358-1761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]