BtaINT0100693 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44555684-44556794:+
Coord C1 exon
chr2:44555684-44555788
Coord A exon
chr2:44555789-44556689
Coord C2 exon
chr2:44556690-44556794
Length
901 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTCACTCTTCTCTGATTTAGAAA
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTTTTATACAAGCAGAACTGGGAAGACACCAAGGATAAGTACCTGCTTCCTCCTGATGCCCCTGAACTTGTCCAGGCCATCAAGAACACAGCTATGTTCAGTAAG
Seq A exon
GTAGGGGCCTCTGCTCAGTTGCTACTTGTCTTCTTGTGTTCTCCCACTGCATCACACAGAGGGGTACCTGCAAACTCTGCCTAATCTAAAATATGGTCCCCCAGCCATTTTGTGAGTAGCCTTGAGGCATGTGGGGCTGCAGGGATCAGGCTGGCTAAGAGGAACTGAGAGAAATGTTCCTGGGCCTAATGGAGGAGAGGGTCTGAACAACTGGGGAAGAGTGCATGGGGAAAACAAAGATGTGCCTGAGGGGAGAGGGGGCTTCCCTGGCAGTCCTGTGGTTAAGACTTCGCCTTCCAATGCAGCAGGTGAGGGTTCGATCCCTGATTGGGGAGTTAAGATCCCATGTGTCTCATGGCCAAAAAACCAAAAACATAAAATAGAAGCAATATTGTAACAAATTCAATAGAGACTTAAAAAAAATTGTCCACATTCAAAAAAAAAAAAAAAAAAGATGCACCTGAAAACCAGTTCTGAGACCCACAAAGACCCACAAAGTATACAGCCCACACTATACGTTGGACATGCCTGGCTGTCACTCTTATTAAAGGTTTAATTTTCTCACTTGTATTAAAGGTTTATTAAAGGTTTAAACACAAAAATTATGCTAAGTGCTTCCTGGCTCCTTACACTTTCCTTAGTACTAGTTGCAGAAGGCAGGTAAAGTCAAAGATGAAACACAATGAGACACATCTGCTCTGCAGTAAATAAGATGCGTCAGAACAAGCCAGGTAAGCTATTGATAAACATGACTTAGATGGAATGGGATCTGTGGATTCCACTTACCTTTGCTCTCCCTTTGCCCCGGGTTCTATATGCCACTGATGGATGAATTCAGAAGTATATATGTCAAGTCAGTGTGTTCTCACATTCTCGTAACTTTCACTCTTCTCTGATTTAG
Seq C2 exon
AAACTATACACTGAAGACTGGGAAGCTGACAAAACTATGTTTTATCCGTATAATGATAGCCCGGAGCTGAGGAGGGTCGCGCAAGCCCAGAAAGCTCTCAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907:ENSBTAT00000055345:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACAAGCAGAACTGGGAAGACAC
R:
GTCACTGAGAGCTTTCTGGGC
Band lengths:
206-1107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]