BtaINT0100726 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22417108-22419006:-
Coord C1 exon
chr13:22418914-22419006
Coord A exon
chr13:22417201-22418913
Coord C2 exon
chr13:22417108-22417200
Length
1713 bp
Sequences
Splice sites
5' ss Seq
ACGGCAAGT
5' ss Score
4.05
3' ss Seq
TTCATATTAATCCTCCACAGGTA
3' ss Score
9.6
Exon sequences
Seq C1 exon
CTCAGGTACAAAGAGCCGTGTGACAGAGCAACTCCTGTGAGCATGACGCCCGAGATAGAGAGAGTGAGGAGAAACCAGGAGCAGCTGAGCACG
Seq A exon
GCAAGTTGTTTCTGTTTTGCTCTTATATTTTACCAAACATTAGCTATTTTTATTCTTTACAATGCTTTCTGAAAAGCATTAGACACTCTACATCTTGGTCACTTCTTTTCTACTATCCCATACTGAGGTGTGTGGACTGTGGCACCCTTGTGAGAGAGAGTCCAGGAAGTTGGGAACTGCTTTGCTACTATTCGGCCATGCTGATTTATTCAAGAAATCTTTTTTTTAAATATTTTTTTATGTGGACCATTTTTCAAAGTCTTTATTGAATTTGTTACAATATTGCTTCTGTTTTATGTTCTGGTTGGTTGGCTGTGAGGCATATGGGATCCTAGCTCCCTGACTAGGGATTGAACCTGTACCCCCTGCATTGGAAGCCTGCATTGGAAGGCAGAGTTCCAACCATTCAACCACCAGGGAAGTCCCTATTGAAGAACTCTTCATTAAGCAATGTGGCAGGCATTATCCTGGTCACTGGTACACAGAGATAGATAAGACCCCTTCCTATCTTCATGGGCCTCATAGTTTAGATGGTAAATCTCTGAAACTACATCCAAATCTAAAGAGCTGGAGAGCAGCATAGTGGGTATGTTGTCAGTCTGAGAAAAGAGAAAGTTGTCTATTGGCATAAGGCAAAGGGAGACCTGAATTGACTGGGGTTCTGAGTCGTAATGTCCTGGCAGGGAACCTTATAAATAAAACAGAAAACATCAATCATTCAGTGATCTGTTGCTAGTAAAGCAAGGGTAGTTAATAATCATGAGGTCCCCCGGCTGTGGACCCTGTGCTAAATGTGTTATGTGATTCGGTGGGGTAGGCCTGATTTATTGCTCTGGTTTGTAGGTGTGGGAAACTGAGTCTTGAGAAGTCAGAGGACATGCAAGAACCCATGGTTTGTGACAGCAGGGCTGGGATTTGAACCCAGGCCTCCCTGAATTCAGAAATCTCTTTCAAATGTGTCCCCTAATGGTTATTTTTCCCATTTTTTGGACCATTTTATGGAATTTTTACCGTTATAAACAATAACCTTCTTCTTCTGAACCAGATAATTTTGAGACACTTTAAAATTTAAGAGTGACTTCTCCCAGATGGAGGAGGAAATAAGGCTGAATACTGCTTTATCCTTATAGTTTCCCTGATAGTGGTATGAGTGAGGGGTCTTAGGCTTCTTTTGAAGATGGAGGCTCCAGGATCAGAATAGGAGTAAATGGCCTTCCCAGGCTGCCATGACTACTTCACTATAGTTCTCTTTTAATGATTTTTTTTTTTTTAGTTTTAATTTTTTTTCTCCCCATTTTCTGTCCACGCACAGCATGCAGGATCTTAGTTCCCTGGCCAGGGAACTAACATGTGGCCACCGGACACCATGGTGTCTTAACTACTGAACCGGCAAGGATATCCCTTATAATGATTTCATTACAGTGTCTTCCCCTTCCATTTCTATTACATTTAGTCGTGGTCTTTGCAATTGGTTTTGGTATTGAACACAGAAATATTTATTAAAAATCATTTTTAAGAAGTACAACCAGCACTTGGTGCTTGCCAAGTCAGAAGAATCCAAAGCCAGATGTAGATTTGAACTGAAAGGCTGACACACACCTACTGTGGGAAAAATTATGTAAAAAATAGGGTTAATTTTGAGGCTTATCCTCTGTTGATATTTGGTTGGAGACCATTCTGCTATTTATTAAAATTCATATTAATCCTCCACAG
Seq C2 exon
GTAAAATACAGAGGAGAGATTAAACAGGCGACTGCAATTTCTGATCCACCAGAGCTGAAGAGAGTGAAAGAAAACCAGAAGAACCTCAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339:ENSBTAT00000061339:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(18.2=12.9),PF0088013=Nebulin=PU(55.2=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(59.3=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTACAAAGAGCCGTGTGA
R:
TGCTGAGGTTCTTCTGGTTTTCT
Band lengths:
182-1895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development