BtaINT0102830 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27347542-27350463:-
Coord C1 exon
chr2:27350401-27350463
Coord A exon
chr2:27347641-27350400
Coord C2 exon
chr2:27347542-27347640
Length
2760 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTGTATGTTTTTGACTCTAGGCC
3' ss Score
9.41
Exon sequences
Seq C1 exon
CTTGAAAACGAAGTTGAGAAGACAGCAAATCTTGTCATTAGCAACTGGAATCAACAAATTAAG
Seq A exon
GCAAGTATACACAAATGTCATTTGTGTAAACTCAATATTGAGGATTGAAGCTTTTGGCATTTGCACAAATGTGATCTTTTTTTTTTTCTGAAGTGAAAATGTTCAATCACGTCAGACTCTTTGCAACCCCATGGGCTGTAGCCTGCCAGGCTCCTGTATCCATGGAATTCTCTAAGCAAGGCTACTGGAGTGGATTGCCATTCCCTTCTCCAGGGGATCTTCCCATCCCAGATATCGAACCTGGGTCTCCAGCATTGCAGGAAGATTCTTTCCCATCTGAGCCACAAGGGAAGCCCCGTGCATTTTCGTGTCAGTATTTGTAAGTGCTAACTGAAGAGAAGAATGTTTTCCTCATCCGAGTTATTATATAGATATGTCCATGGAAATCCCATGGAAAGAGGAGCCTGGAGGGGTACAGTCCATGGGGTTGCAAGAGACTAACACAACTTAATGACTAAACAACAACAACAAATCTTTCAACTAAATCTGTAGAGGAGCAAAACTCCAAATATGGCTTTCATTTATAGCTAATAAGTAGCTTTTATTGTATGTCAAGTGCTATATATATTTATGTATTGAATCATCACAAAAACCAACCAATGTGGTATATGACTACGTGTTGTCCCATTTTATAGATGGGTGGGGAAATGTAGACACAGAGGTTAATAATCTTCTAAGGTTACAAAACTGGTTAATAGTTGAACCAAGTAACCTGGGCTCCAGGTTACTGACCTTAACCATTACCTACACTGACTGCCTCTCTGTATAATTTGTAACTTAGGGCATGATATGAATACTGAGTTTTGGTCTTGTCTTTTATAGAAAGTCATTTGTGACCTGTTTCTCCAGTGAGAGGAGCATGGTTGAGGGATGGGTAAAGCTGTGTAAAGGGGAATGCCTGTATTGATTCCATGAATATGTATGACCCGCTTCTTGTGCAGCATGCTGCACTAAGACACAGTCCTTGTTTCATGTAATTTAAAGTATACTAGCTAGATATTAATAACATGTGTGCAGGAAATAGTGAATGACTTCTAAGGAGAGAAGTTATGATCTGATGTGAGAATTTAGGGCATCGTTATATGGTCGTAAGCAGAGAGAATCACAGATGGTGCCCATATGTATGTACAGAAGATTATTCTAGAACAATCTAGTTTAGAAGGAATTCATTTTGAGTGGGAAAGACTAGAAGCCAGTGCAGAGGGAATCTGCTCAGAAAACCCAATGATCCCCTTTGAGAAGACTTGGACTCCCAAAGTTGAAATTCTCCTTTTTCATCTCTAAAGTACTGGTGCCCCAAAAGATCCTTCTTTCTCAAGTAGACACTCATGAGTGCCAAATAAGGGGAGACACCTTCAGAAACTGGGGGCCCCATTTCAGCCCTCAATGTTGCCTCTGAAGCTGCTGCTGGAATTGAGGGCTCCTTAAGTCAAGGACATTATTTATAAATGTTTGAGAAAAGTGAATTTATATACTGACAATAGTAGTCCCGGTAAAAAGATGCTCATGAGAACCACTTTTATAGTAAATATGTGAACGTCCCATAAACAGTGTCCAGTCATTTGTTTCCAAGTTTGCTCTTGATTTATGAGCTTTCTCAAACAGTTTGTTTTTAAAGAATTCATTCTTAAATATTCAGCTTTCATGGAAAATTTGATATAATAGATGGGAAGAGAAACCATTTTCAGTAGCTGTCACTGCTTTCAGGAACAACAACAAAAAAACCTTATTTCCCAGTTTCCACCAAGTAATTTTTCTAAGTAAAACGATTTTATTTTTATGAAGATTGACAGAGAAATTAGAGAACATAAGATGCTTGTGCTATAATTTTCTCTCCAGTTACAATTCAAGGGATTCAGCATGTCTTCATTCAGTAATGAAGCATAGTCTGTTTTGGAGATGCAAGGGAAAAGCCTTAAAGGACCAAATGTCCTTGCCTCCTGCTCTCGTTTATCAGCAGGCATGTGACCAACAGAAGGTGGGGGGAGGCAGGCTCTCTAGGCTGCTTGTTCCTTGAATTCCCTTTTATAGAGGTTTCGCGTGTTTAGAGACATTCAGAAGGCTTTGCCTCTGACTTCCTAGGGAAAGAGAGACGTAGATTTCCCCCTTCATTATCTGGTTTTACAGGCCTTGCAACTTGAGGTGAAACACCATACAGCCTTTTCAATCGACCCAGTTCCTGAACAGGCTGAATCCAACTCAAACCAGATTCTATTGATTTATCTCTGGAACATCCCGAGCTGGGGCTGTATGCAACAGAGAACAATCACTTAAATTATAATCCATGCCGAGGTTGGAGGCATCAGCAGAGGAGGGGGACTTTACATGCTCTTCCTTCCCAACTCCTCCCTCCACCTCCCTGCAGCAAATTCAGGGCAGTTCGCAGGATGTCAGGCAGATGCCCAGCTCTCAAGCCAGGGCATCAGGGAGCAAAATTTCCCTTTTGCTCTAAGTTTTAGGAGAGCATCTTAAAATGACCTCAATTATGGTTTGTAGACTTAGCCTTCAATGATTTAACAAAATACATGTCCCTCTTGAATGAACTCAATGCAATGAAAAAATATACAATGGTTCTCAAGGAAAAATATTAGCCACTGTGGTGTTTTAGCAGATTTTGGGGTGAGGGCAGAAATGAAGAACTAAAAATACACGATCATTCAAGCTAGCACGTGAATATAACTTGTTCCAGAACAGAAGAGTTTCTCTCTTGACACCAGTTTCTGATCCTTCTTTGCTTTTCTTGTATGTTTTTGACTCTAG
Seq C2 exon
GCCAAGAAGAAATTGATGGTTAGCACCAAGAAACATGAAGCACTTTTCCATCTTGTAGAAAGCTCCAAGCAGATTACAACAGAGAAGGAGAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362:ENSBTAT00000013682:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]