BtaINT0102870 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007909 | NOTCH2
Description
notch 2 [Source:HGNC Symbol;Acc:HGNC:7882]
Coordinates
chr3:23431631-23438726:+
Coord C1 exon
chr3:23431631-23431741
Coord A exon
chr3:23431742-23438533
Coord C2 exon
chr3:23438534-23438726
Length
6792 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ACTGTCCCCCTTCTCTACAGGGC
3' ss Score
11.56
Exon sequences
Seq C1 exon
GTGTTAATTGTGAAATCAATTTTGATGACTGTGCAAGTAACCCGTGTGTCCATGGAGTCTGTATGGATGGCGTTAATCGTTACAGCTGTGTCTGCTCACCAGGATTCACAG
Seq A exon
GTAATGCTCCTTTTTGTTGGGACCTTTTTTCTATTTGTTTTTTCAAGTCAGTTGCTGAAAATATCAGAGGCAACTGTGTTATATACTCATGACCCATAAATATAAGGTGTTTTAGTCTTGCCTTTATTTTAATACTGTTGAAGGACCTTCCTTCTTCAGCCCCCTCACTTTGGGAAAAGGGCATCTAAAGGTTAGTTACTTTCAAATATATCTGACTTATTTGTCTCTTGGAAGGTTAGAAGGTTGTTTCTGTGCTTCTCTGGCCCAGTTTTCTACTTACAGGCCTTCCTTGAACTGTAACATGAAACTTCTCATTAGTTAGGGTTTTTAAGCCATGTGTTTATAGCTACTTAAAAAAGAGTTTCTTTTCAGACCATGAGTTTCCATCACTGTGCTTAAGTTATATAGCTTTCAAATTTTTCTATACTTAGTAGTGAATGCCTTCTATAAAGGCATGGCCAAGGTAAAATTCTATGAACACCTTATATGATTTTTTCTGAGTCCTTCCTCTTATAAGTACTTAAGTAAAGTCAAAACTTAGCAAAGCAACCTATTTTTGGCTAGCATAGTGGGTTTTATTTTCTCTCCAGGAGGGAGAAAGTAAGTGACTAAAATAAAATTGGTTATAATTCTTCTTAAATTCTTAATTAAACCCCCCAGCTAGAACATTTATATACGCAGCATGTGTGCACACACACAAACTCACATGCGTCTTTTCTCTTATCTTTTTTCTTGCTAATAAGATTACCTTTACCTTTTACCTTCCTGATCAAAAAGTACTAGGAGCTACTGAGGAAATATGGAGCCTCTTTCTGATACATCTGTTTGTCAAAGGCACCATCAGAGGGCGTGTCATGTGCCAATCCCATTCCTTCTAGACAATGCCACACACAATAAGGCACTTACATAATGATGTTACCATTTCATAAATAACATGTGGTCCTTTACAACCAATGTGAGAAACTTCCCACAGAGCTTTTTAAACTATGATGTCAAAAAGCCAAGAGATGCCTCTTTCTTGCTGGGAACTTACCTCTCTCTGTATTTCACAATCCTTTGCACTGCTTGGTGTGATTGTGGACATGAGACAGGAACGTTTGTGGCCTACGTGGTCACCATGATCTCTTTTCAGTGAAATATCACTCAGAAGACCAGGATGATGAGAGTTCTTGTGTCTAGTACCCAGCACTGCTGGTGTGGAGCCAGATGTACTTCTGTATCCTGAAATGTGTCTCTCCAACATTCAGTGACAGCCAACTGAATTTCTTTTAGACAGAATGGCATATGTACTTGTTTACATAGGTAGTAAGAAGAGAATAGCTTCCATTTATTCAGGCCCTGTTTTGAGGTAGGCATTAAATCAAGTGCCTAATCTCATTGTCACTACTATTATTATTTCTACAGTATTGATGAGAAACCCTGAATTCAGAGAGCTTAAGTAACAGTACCAGTGCACTAGGGCCAGCATTCCACCCCGGGGGTTTCTATTACAGAGTTCATACTCACTGCCACTTGACTGGACAGCGTAAGTAGGTGCCTGCTGTGGTTTCTTTTTAGATATGTAAGCCTTAGACTCGACTTAAACTTTTTGGAAATGTCAGTGAATCATATGCTCTCTCTTTTCAACATTTAGCAAATCAGGAAGGTCATGGAGGGAGGACATAGGCTAAAAATATTCTAAAATAAACTTAAGGTGTAGCATGAAACTGCATAACCAAGGAATGGAATGTTTTGGTTACTGGGTGGTACCCTGTTCTTGGAACTGTTTTCTACGTCTATTTTTTCTATTTGTTTTTTCAAGTCAGTTGCTGAAAATATCAGAGGCAACTGCGTTATATACTCATGACCCATAAATATAAGGTGTTTTAGTCTTGCCTTTATTTTAATACTGTTAACTTTTTATTACAATTTTAATAACAGCTTGAACAGATTTAAGGGAATTTTTTTTTCAGACAAAATTCTCTGTTCTCCGCAGACCACTTTATACTTACTGATTGAATAGGAAGTAAGAAATCATGTGGCACTTCAGTAGACCATTTTTCAGTTGTATAAACTACTTTTTCAGTTTCACATTCATGTTCATTATTTTGCTAACTTCTTAGAATGATCCATAAAAGTAGATAGGTTGTAAATGAAACCAAAAGCACAAGTAACAAAAACTAAAATGAACTTCTGGGGGGCAAAAAACAATATGTTGAAAAGCTAACCTACAGAGATGGATAAAAATATATGCAAACAATGTGTCTAACAAAAAGTTAATATCCAAAATGTATAAAGAATCATACAACTCAATAGTAAAGAAGCAAATAATTCAATTAAAAATTGGACAAATAACAAGAAAAAAATTCAGTATAGTGACAGATGTTAACTAGAATTATTGTAGTGATCATTTTTCAATATATACAAATATCACATCATTATGTTGTACACCTGAAACTAATAATGTTATATGTCAATTATACAACCCACTCCAGTATTCTTGCCTTGAGAATTCCATGGACAGAGGAGCCTGGCAGCCTACAGTCCATGGGGTCACAAAGAGTCGGACATGACTGAGTGACTAACACTTTAAAAATGAAAACACATTAGGAGTAGGGAAACCCAATTTTAGAAAATATTACTGGAAAATTCCCAATAATTTCCAGATATAAAATACTGGTAATGTTCACTCTAATTCTCAGAGCTACATGATTTAACCACATTCTGATTATATTTTTTAGGCTGTAAATCATTATTTATATTTTGAAATCCAGTATTGACTGAAACAGGTAAAGTTTTAAAAGCTTTACAATCTACCAAACCCTAGTGACTTTCAAATAGCATTTGAAAGGCTATAATGGTGATGAGTAGCTACCAATATAGCTAATCCTCATCACAGTATCATTATGCAGCTGTATAAAATCACCAAATTCAATTAAAAAAAATGGATTTGAGGTTTACAATCTCGTCTTTCTTTCAGTCTCTTACAGGATTTTCTAATCAGGAGTAAAGTGAATAAATATTTATAGATTATAAATTTGTAAATGTTGAACACGCAGTTGTTTTTGGTTCTCCAGCCATTAGTGAAGGCATACTGCTAAGCACAGAGGAGCACTGGGTTATGGGAAAAGTGGTAGACAATGAGGTCATGGCTTTAAAAGGATTTAAGGTATGATCAGGAACCCAGACTGCATACATCAGAAAATGACTAAAGACTAGGGAAGTAGGTAAAAGCAAGGTATACACATTCAAAGAAGTATAAGCGATGAAGGAAAACAAATGTTTAGAATCAGGGGGAAAATGGGCAAAGGACGTTCTTTTTCCAAAGAAGACATACAGATGGCCAACAGGTACAGGAAAAGATGCTCAGCATCACTGATCACTGGGAAAATGGAAATCAAAACCACAGTGAAATATCACGTCACACCTGAAAGATTGGTTGTTATTAAAAAGATAAGAGATAACAAGTGTTTGTGAGGGTATGGGAAAAGGGGAACTCTCATGCACTGTTGATCTGAATGTAAAATGTTACAGTTATTATGGGAAAACAATATGGCAGTTGTCAAAAAATTAAAAATTGAACTACCCTAAGGTCTGGGAATTCTACACTTGTGTATCTAAAGGAATTGAAATCAATATTTCAAAGAGGTATTTGTATTTGCACACACCCATGTTCATAGCAGCATTATTCACAATAGTCAAGATATCAACCAGAGTGTCCATCAAATGGATGAATGAGTAAAGGAGATACCTTTTATGTATACAATGGAATATTATTCAGCCATGAGAGAGAGGGAAATCCTGACATTTGTGACACCATGAATGGAACTTGAGGACATTAAGTGAGATAAATCAGACAGTGAAAGACAAATACTGTATGGTATCACTTAATGCATAATATTAAAAAGCCAAACTCATGAAAGCAGAGAGTAGAATGGTGTCTATCAGGGTCTAGGCTAGGAGGGTAGGGGATTGGGGAGATATTGTTTAAGGGTACAAATTTGCAACTACTAGATAAATAAGTTCTGATTGAATGCATAGCATAGTGATTATAGTCAGCAATACTGCATTATAAACTTTCAAATTGCTAAGAGAGTAGATCTTAATTGTTTTTACCACAAAAAGAAATGATGGTTATGGGACATGATAGAAGTGTTAACTAACTCTGTGGACATATCATATTGCAATATATAAAATATATCAAACCAACACATCATATACCTTAAACTTACACAATGTTACATGTCAATCATGTCTTAATTTAAAATTAACAAAAAAACTTAGGGAATTTTTATTATCCTCATTTAACAAATAAGGCAACTGAAAGAGCTTAATGTATCCATGGTCTTAGCTAGTGAGTCTCACTGTTAGGACTGTGAGTTCCCAGAAGGCAGGCGCCTCCTTAATTGTCTTTTTAGCCAGCATTTTCTTTTTTTTTTCTAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCGCCACAGGTATACATGTGTTCCCCATTCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGTCGTCCCAGTGCACTAGCCCCAAGCATCCAGTATCGTGCATCGAACCTGGACTTAGCCAGCATTTTCTAAAACTGTGTAGCACTCAGGGAGCACTTAGAAAATATTGCTGAATGAATGACCAGCACTCACATGTGGAACCTCTGACATCCAACACTAGACTCTTGAGTCTGGACTATACCATGCTTTCATTCATTAAATACTAATTTGTCAGGCATCTATCTACACAATAAGAGACATTGGCTAATTTCTCATTCAATAGTTGCTGCTAAGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCGTAGACGGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGTATGAAAGTGAAAAGTGAAAGTGAAGTTGCTCAGTCGTGTCCGACTCTTAGGGACCCCATGGACTGCAGCCTACCAGGTTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCTCATTCAGTAGTTACTGAGCCCAGTAAGGTACATAGCCTTGTGCTGGGAGTTCATGAAATACTGGGATTTCCGATGCTACTTAAAGGATGAGAATTTGCTAGTGAAGCAGCTGCAGTTCACCAGGTAGACTACACAAAGAGGCACTTAACCCTCTCAGCTAAAGATGACTTGAAGATTGATTCTGCTGAGAGCTTTAAAAGCAAATAAAGAAAATGTGAGAAGTATGACTTCTGAGAAGATTTTTCCCAAGAAAAGACAGAATTGAAAAAGCTTTTTCATCTCATTCTCCACTGGATTTCAGACAGAGGATAGCGCTGTAGTTGAAGACTTGTGGCTCTTATCTTGGTGCCAGTGGCAAACATCTAAAAAAAAAATCAGAAGTTGAAGCTAAGAAAGTAGTATTGTAGAATTGGTTATTAATAAAATACTTAAAGGGAAAATAGCAACTACTATCAGATTATGGGTTTTTTACCACACGAACTACCAATAATGGTTTAGAGAGCAGTAGAGAGTGAAAAAATGTTAATACCCATACTTTAAAAGGGTGTGTATCTATTTCATTTGGAATTTCCTGTTCTAATTGCAGGGTTACTCTTTCTTAAATAAAAATGCCTGGTTTTATATGAATCAGAAAATTGTATTCTTTGAAATTTGTAATTCCTTCATAGCAGTTACTTGTCACCACTCATTTACAGAATTATGGGTTATTTTAAAATTTTATATCATTTTGGAATATATAGTTAAATCTCATTTATTCAAAACTTAACAAAGCAAAACTCATAGGTAACTGGCATACTTTATTCCACTTTATAGCAGACATCTTTTCAAAGTGCAATCTTGGGTATGTTTTAGAGGAAGAACATATTCATTTCAGTTTCATATATTATGAACATTTACATTATAACTTGTGAAATAATAATTGTCTACCTCATAATTTCTCAAAATGTAGTATCTGAAACACCTACATTATTTAAAATGTAACTTTGGAGCTGTAAGGATCTTCTTTTAAAACAAGTACTTTTAGCAATCCTTGCACACTCAAATTTGAGAACCACTGGTCTATATTGAGAGACCCTGAATGCTTTTCTCAATGATCAGAGAACAATGAAATTATAGTTTTCTCTTCTTCCTGAGCCAGAAAATAGATTAATACAATTCTAAAAGTGAAAACAAATGGCTTTTCTTTTTAAGCAACTTAATCATTAGTAGGGATTCAATGGTAATCACTGAACATTCCTGTTAATTGAAATTTACCATATATAGAAATGTAAAAGATTGACTAAGTCTTACAAGAATGAGTGCAGTAAACCAGCTGACAACAGTGATAAGGAAAGCTTGAGAGTTCTGCGAACAGCAGCAAGAAGAGCAGCCAACTTTGATAGCATTTGATGTTCTCTTTTTGAATATTTGATGTAAAGTTTCCCCATTTCTAAACTGGAGTAAAGAAACACATGTCGAAACACTACAACACCGTTCCAGTGTTTTGTTAACTTTGTTAAATTATCAAAGTACAGTGCTCTCTGCTCCTTCTTGCATGGCACTAAGTGCTATTGGATGTCTTCTTCCTTAAGTCTTGACATTTGGTGCCCACAGCATTTTATAGCCTTGGCAGGTAAAGGTATCTGCACAATAGATCTCATGGTCCTGGGTCTATTCCCTAAGCATTTTGGATTTGACAGAAACTGTCCCCCTTCTCTACAG
Seq C2 exon
GGCAGAGATGTAACATTGACATTGATGAGTGTGCCTCCAATCCCTGTCGCAAGGGTGCAACGTGCATCAATGATGTGAATGGTTTCCGCTGTATCTGCCCTGAGGGCCCCCACCATCCCAGCTGCTACTCACAGGTGAACGAGTGCCTGAGCAATCCCTGTGTCCATGGAAACTGTACTGGGGGCCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007909:ENSBTAT00000010400:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(5.3=5.3),PF0000822=EGF=PU(90.0=71.1)
A:
NA
C2:
PF0000822=EGF=PD(6.7=3.1),PF0764510=EGF_CA=WD(100=55.4),PF0000822=EGF=PU(53.3=24.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]