BtaINT0102887 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007909 | NOTCH2
Description
notch 2 [Source:HGNC Symbol;Acc:HGNC:7882]
Coordinates
chr3:23471145-23471891:+
Coord C1 exon
chr3:23471145-23471355
Coord A exon
chr3:23471356-23471794
Coord C2 exon
chr3:23471795-23471891
Length
439 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TCATGATTCTGTCATGTCAGAAA
3' ss Score
3.33
Exon sequences
Seq C1 exon
GTGAATCTCTGACCCCAAAACCCACTCAGCTTCTCTATCTGCTTGCTGTTGCCGTTGTCATTATCTTGTTTATTATCCTCCTGGGGGTTATCATGGCAAAACGAAAGCGCAAGCATGGCTCCCTCTGGCTGCCTGAAGGTTTCACCCTTCGCCGTGACTCCAGCAACCACAAACGTCGTGAGCCAGTGGGCCAGGATGCTGTGGGACTCAA
Seq A exon
GTAAGAGTTTGTCAATAAGCTACTATTCACAGTAATAACAAGTACGGATAAGTGGAAAATCAGATCTTGTTGAATCATGATTTTAAATTCAGAGCTCTGGCCATGCCGTGCTACTGTACTTGACCGTGATACTGAATGCCTGCTTGTGGCTATAAAATAAGAGTCTGGATGCTTCAGTTCTGTACATTTTATCACAGGGATGCTCAGCTTCTGTGATGAGACACGCCTTTGTCTTAAGCTCTTGCTTAGTGGGAAAGGAACTGATATTTACTCAGACAATGGGATGTAATATTGCCCATTTTTCCCCCAGGTCAAGGCCCCTGAAAGTCTGACTGTAGCCATGAGAGTGTGTGATGGCAGAAAAATTACGAAAATTTCTATGTTCTTTTATGATATAACCCTGCTCTTATTTTATACCTTCATGATTCTGTCATGTCAG
Seq C2 exon
AAATCTTTCAGTGCAAGTCTCAGAGGCGAACCTAATTGGTTCTGGAACAAGTGAACACTGGGTCGATGATGAAGGGCCGCAGCCTAAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007909:ENSBTAT00000010400:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF076847=NODP=PD(14.8=12.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTCTGACCCCAAAACCCAC
R:
GGCTTTCTTAGGCTGCGGC
Band lengths:
302-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]