BtaINT0102941 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26987724-26991451:+
Coord C1 exon
chr23:26987724-26987908
Coord A exon
chr23:26987909-26991198
Coord C2 exon
chr23:26991199-26991451
Length
3290 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGACCTTCTTTGCCTACCAGTGT
3' ss Score
7.99
Exon sequences
Seq C1 exon
GCACAGAAGTCTCTTCCCTGTGCCAGAACGGAGGCGTCTGCATTGACAGCGGCCCCTCCCATTTCTGCCACTGTCCCCCTGGATTCCAAGGCAGCATATGCCAGGACCAGGTGAACCCCTGTGAGTCCAGGCCCTGCCAGCATGGGGCCACCTGCGTGGCCCAACCCAACGGTTATCTCTGCCAG
Seq A exon
GTGAGAAGGTCTAGAGGAGGCGGGGGGGAAGACAAAGTTGGGCTGGATATGGAAAACAGCAGTCAGGGGGCAGAAAGGGTGGGGAGAAGGCATTTTCATTTACCCCATACGTCCAACCAACCACCAAGTCAAGCTGTTTTGCCTCCTGAATATTTCTCAGCTCTGTCCTTGCCCCTTCACCCTCATCCCACTGCCTTAGTCCAGGCCTTCATCTCATTCCACCTGGACACCTGCATCAGCCTCCTAATAATTAATATCATCGCTGCCTCCACACTTGTCCTCCTAAAGGTTCACCCTCTATTCCACCACTAGGGTGCTCTGTTGAAAACATTAAGCTGGCCTGTCACTCTCCTACTTAAAACCTTTCAGTGGGGACTTCCCTCGTGGTGGCTCAGCCAATAAAGAATCTGCCTGCAGTGCAACAGGTGAGGGTTTGATGCCTGGGTTGGGAAGATCCCCTGGAGATGGGAATGGCAACCCACTCCGGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGACTGGCAGGCTACAGTCCATCGGGTCACAAAGAGTCAGACATGACTGAGCAACTCACACGTTCACTTTCACTTTCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTAGAGGCAGGTGGATGTGCTGTGGGGACTTCCCCTGGGCGTTTGGGCTCCCTAGCAGAGCCGCAGCGCAGGGGAACCAGCCCATGATCAGTGAGCTCCGGGCAGTTACTTTGGTCCCAGGTTTGGAGCCCAATGCCCGGAACGCGGGAGAGAAGAGGCTGGCTGCCGGCGGGTGCTTGCAAGCCTGTACTGGGAAGGACCGAGTGAGTTCCACACCGGCGGAGCTCCAGCTCTGCGCCCAGGCGCGATAGCACAGAGCCCCGGCCGAGAGGCTGCTCTGTGCCGGGCGAGCCTCCCCACGCCCTGCCCAGCTTCTAGCGTTCGCTCCCGGGAAGGAGCAGGCTGCGGGAGTGTGGGAGCCGTGAGTGGTGCCTGACTGCTGCCTCAGCTCAGCTCTCGCCTTCCCTTCGGACCTAGGAGCCAGGCGTCCTTGCAGAGGGCTTAGGGGCTGGGGGTGTGCACACTGCCAAAGCCTCCCGCGAGGAGAGCTCTTTCCGAGGGAAAGGAAGCGCCCCAGGCTGCATTCCCAAGCTGGTGCTTCCAACCCTTCAGTGACTGCCCACCTCTTTCACAGTGAAGTCCCAAGCCAGCGTGACCCAGCCCTGCCTCCCTTTCAGGCCTCATCTCTCTTCACCCACCACTCAACTGCTCCAGCAACACAAAACTGCAGCTGGCTTCCCCACACCCCAGACTGGCTCCTCGGTGGCTTTCCTCACCCCTCTTCCACTGGCTGGTGCCCAGGAGGCACCTGCCTCAGGGAAATGTCCCTAACTTCTCTCCAGACTGGGTTAGGGCCTCTCCTTGGTGGTTCAGGTCACTAAGCAGGACAGGAAGGCACAGCTGGGTTTTAATTCCAAGCAACCTGATCCATGTACTCACAACCATGACTTTGAATAGAAGGCATAATCCCATAACTACCCTCTTTCTTTAAATTTTCGATGTATTTTTTAACTTTTTATTACAGGCATTTTCAAACATACACAAAAACAGCGTACTGATGAGTAGTGAACCCCCGTGCACCCATTACTCAGCTCTACTTCCTCTTTCATGAAACTACTTCCTCCAGAAGTTTTCAAAACTCCCACCTCCCTCGTCTGCTTCTTCCAACCCTCTGGCCATTCCTGACACTCTCTGAATTGTTTTTTCTCCACCTTTCTGAAACCTTCCTGGTACTCCATTCTTGCATACTCTCCTTCCTCCTGCAAGAACTCAGCACGTGGTACAGATCTCACAATGACCCTTTTCTCACCAGCAGGATATGCAACAATCAGAAAATGGTTAAGGTCATGAGTTACTGAGTCATAGACTTGTGCTGAATCCCAGCTCTGCCACCTACCAGCTGTGTGACTTGTGCAAGGCACTTATCTTTCAAGGAATCAGTTTCCTTTTCTGCGAAGTGAGAATCAAATGAGATGACCCATAGAGAGGGTGGTCAGGAGAGTTCTAGAGGTTATGTGTATAAATCACACAATCAGTGATAGCTGTCTCTTCTCTGGTTGACTGAGAATTTCATGGAGGCAGGGAAGCAGTTCTAATTTTCTTTGTATTTCTAGAGCCTGAAAAGATGCCTGGGCACAAAGTAGGCAATTCAATAAATGCTTGAAAGTGAAAGTGTTAGTCACTCGGTCGTGTCTGACTCTTTGCAATCTCATGGTCTGTCCATGGAATTCTCCAGGCCAGAATACAGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCGTCCCGACCCTGGAATTGAACTCCCATCTCCTGCATTGCAAGCAGATTCTTTACCATCTGAGCTACCAGGGAAGTCTAATAAATGCTTATAAATTAATAAAGCATGAGAGAACCCAGTGGGTGTGTGGTTGGAAGAGGGAGGTTTTATCAAAAATGGAATTATATCTAGTGGTAATGAATTATAGAGATTGGGACTTGGAAGGGGACAAGGTCCATATTACTGAACAATAATGTCTCATGTGGAGTTCAGGTTAAAGGGTTAGGCTACACGTGACTGTGATGGAGGGTGAGCTGAGTGATGCTTTGAGTTGGAAGGTGGGATGCTAGGCAGACCATCTTGCACTGGGTCCCCTAGAGTGCCAGGAGGGGCTCACTTACTGGTTCCCTGTCTGACCTTCTTTGCCTACCAG
Seq C2 exon
TGTGCACCCGGCTACAGTGGACAGAACTGCTCAGAGGAACCGGACGCATGTCAATCCCAGCCCTGTCACAACCAGGGGACCTGTATCTCCAAACCCGGAGGCTTCCACTGTGCCTGCCCGCCAGGCTTTGTGGGGCTGCGCTGTGAGGGGGACGTGGATGAGTGTCTGGACCGGCCCTGTCACCCCACAGGCACTGCAGCCTGCCACTCTCTGGCCAATGCCTTCTACTGCCAGTGTCTGCCTGGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424:ENSBTAT00000050083:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=48.4),PF0000822=EGF=PU(69.7=37.1)
A:
NA
C2:
PF0000822=EGF=PD(24.2=9.4),PF0000822=EGF=WD(100=36.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]