BtaINT0102946 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26994075-26994732:+
Coord C1 exon
chr23:26994075-26994458
Coord A exon
chr23:26994459-26994556
Coord C2 exon
chr23:26994557-26994732
Length
98 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CAGGGGTCTCTTCCTCACAGGTT
3' ss Score
8.73
Exon sequences
Seq C1 exon
TCCAGCCTATGACCAGTACTGCCGCGATCACTTCCACAATGGACACTGCGAGAAGGGCTGCAACACGGCAGAATGTGGCTGGGACGGGGGAGACTGCAGGCCGGAAGATGGAAATTCAGAGTGGGGGCCCTCCCTGGCCTTGTTGGTGGTGCTGAGCCCCTCAACCCTGGACCAGCAGCTGCTCGCCCTGGCCCGGGTGCTGTCCCTGACTCTGAGGGTAGGGCTCTGGGTGAGGAAGGACAGTGAAGGCAAGGACATGGTGTACCCCTATCCTGGAGCCCAAGCAGAAGAGGAGCTAGGAGGAACCCCAGACCCCTCTCAGCAGGAGAGAGCAGCCCCCCAAACAGAGCCTACAGGCAAGGAGACAGATTCCCTGAGCACTGG
Seq A exon
GTAAGGACAACGGCGGGGCGGGGTGGGGGAGGAAAGACATCAGTTCTTTAACTGGCAGAGGGAAGCCAGGGACTAACCCAGGGGTCTCTTCCTCACAG
Seq C2 exon
GTTTGTGGTGGTGATGGGTGTGGACTTGTCCCACTGTGGCCCCGAGCGCCCTGCATCCCGCTGCCCCTGGGACCCTGGGCTCCTACTCCGCTTCCTTGCTGCAATGGCTGCAGTGGGGGCCCTGGAACCCCTACTGCCAGGACCCCTGCTGGCTGCCCACCCTCGTGCAGGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424:ENSBTAT00000050083:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0006612=Notch=PD(84.6=25.6),PF068168=NOD=WD(100=39.5),PF076847=NODP=PU(4.6=2.3)
A:
NA
C2:
PF076847=NODP=FE(90.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGGACAGTGAAGGCA
R:
CACACCCATCACCACCACAAA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]