BtaINT0102950 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26995854-26996786:+
Coord C1 exon
chr23:26995854-26995992
Coord A exon
chr23:26995993-26996490
Coord C2 exon
chr23:26996491-26996786
Length
498 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
GTCTCATGTCTCATCCACAGATG
3' ss Score
10.86
Exon sequences
Seq C1 exon
GCTGAAGAAATGGCCTCACCCCCCAAGTGCCAGCTCTGGTCTCTGAGCAGTGACTGCCAAGAGCTCCCCCAGGCAGCCATGCTGACTCCTCCCCAGGATTCTGAGATGGATGTCCCTGACGTGGACACCCAGGGACCTG
Seq A exon
GTACGTGAGTCATCCTAAACCAAGAAAATGAAAACTCCCTTTGACCCCTTTTAGAATCACAAAGTCCTTTGATATCTGAACTGGATAAACTAATACCAGAGTAAGTGCTTCAGAACAAAGTGTGGTCCCAGGACAGAAGCAGCAGCATCACCAGGGAAATTGTTAGAAATATTAATTCTCAGGTTCCACTCCAGAGCTTCTGACTCAAATTCAAAATACCAGGGAATCTGTGTTTTAACAAGCCCTGTAGGTGAGTCTGAACCAGGGCTCAAGTTTGAGAATCACTGCTCTAAAATGTTAAAGTATTAAGGCCTGACACTTCCTTTTTACAGAGGAGGAAACTGAAGCCCAGAGTAAAACAGAAAGTCACTGACACAAGCCACACAAAAATCAAGATCCCAAGCTCGGCTTCTTGACACCTCAGGCCGTGATTCTCCCTAGGCCTCCATGTTCTCCCACTTTCCCAGTTGTCCCCCATGTCTCATGTCTCATCCACAG
Seq C2 exon
ATGGGGTGACACCCCTGATGTCAGCAGTCTGCTGTGGGGGCGTGGAGTCCAGGACCTACCAGGAGACATGGCTGGGAAGTCCTGAGCCCTGGGAACCTCTGCTGGAGGGAGGGGCCTGTCCCCAGGTTCACACTGTGGGCACTGGGGAGACACCCCTGCACCTGGCTGCTCGATTCTCCCGGCCAACCGCTGCCCGCCGCCTCCTCGAGGCTGGAGCAAACCCCAACCAGCCAGACCGGGCAGGGCGCACCCCGCTTCACACGGCTGTGGCTGCTGATGCTAGGGAGGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424:ENSBTAT00000050083:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(81.5=75.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGGATTCTGAGATGGA
R:
GGCAAACCTCCCTAGCATCAG
Band lengths:
344-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]