BtaINT0102951 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26996491-26997159:+
Coord C1 exon
chr23:26996491-26996786
Coord A exon
chr23:26996787-26997011
Coord C2 exon
chr23:26997012-26997159
Length
225 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTCCTCTCTGGCCCCTCCAGCTC
3' ss Score
8.14
Exon sequences
Seq C1 exon
ATGGGGTGACACCCCTGATGTCAGCAGTCTGCTGTGGGGGCGTGGAGTCCAGGACCTACCAGGAGACATGGCTGGGAAGTCCTGAGCCCTGGGAACCTCTGCTGGAGGGAGGGGCCTGTCCCCAGGTTCACACTGTGGGCACTGGGGAGACACCCCTGCACCTGGCTGCTCGATTCTCCCGGCCAACCGCTGCCCGCCGCCTCCTCGAGGCTGGAGCAAACCCCAACCAGCCAGACCGGGCAGGGCGCACCCCGCTTCACACGGCTGTGGCTGCTGATGCTAGGGAGGTTTGCCAG
Seq A exon
GTCAGTGCACACTGGGGTTGCTAAAGGACACTGGGCAAACTTGCAAGTAAGGCTGGGCAAAAGCCTTCTCCAGGGTTTGGCAAAGAGGAAGGTGATGATTGGGGACTGACAGAGAAACAAGAACAGAAGACTGAATATGGATTGGGAGGTGGGTTAGCAGTGCAAGGGGCCTTAGCTAACAGTCCAGATATACCAGCAGTCACTGGTCCTCTCTGGCCCCTCCAG
Seq C2 exon
CTCTTACTCCGCAGCAGACAGACTGCAGTGGATGCACGGACAGAGGATGGGACCACAGCCCTGATGCTGGCCGCCAGGCTGGCTGTCGAAGACCTGGTTGAAGAACTGATTGCAGCCCAAGCAGATGTGGGGGCCAGAGACAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424:ENSBTAT00000050083:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(81.5=75.8)
A:
NA
C2:
PF127962=Ank_2=PD(16.3=30.0),PF127962=Ank_2=PU(58.7=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTACCAGGAGACATGGCT
R:
CTGTGGTCCCATCCTCTGTCC
Band lengths:
302-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]