BtaINT0102953 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26997689-26998620:+
Coord C1 exon
chr23:26997689-26997786
Coord A exon
chr23:26997787-26997930
Coord C2 exon
chr23:26997931-26998620
Length
144 bp
Sequences
Splice sites
5' ss Seq
AGGGTTAGA
5' ss Score
1.78
3' ss Seq
CGCTGTTTCCTCCCGCGCAGGAG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GAAAAACAGCGCTGCACTGGGCCGCCGCCGTGAACAACGCCCGGGCCGCCCGCTCCCTTCTCCAGGCGGGAGCCGATAAAGACGCACAGGATGGCAGG
Seq A exon
GTTAGATGGGGCCCCTAACAAACTGGGAGCGGGAGAGGTGAACTGCGAAAACCCTGAGGGGGCGGGGCAGCGGTCAAGAAGGAGGGCCTGTCCTGCGGGCGTGGCCTTCCCTGACCTCGCCCTTCGCTGTTTCCTCCCGCGCAG
Seq C2 exon
GAGCAGACGCCGCTGTTCCTGGCGGCCCGAGAAGGGGCGATGGAGGTAGCTCAGCTGCTGCTGGGGCTGGGAGCCGCCCAAGGACTACGGGACCAGGCCGGCTTAACACCCGGAGACGTCGCCCGTCAGCGCAACCACTGGGATCTGCTGACGCTGCTGGAAGGGGCGGGGCCACCGGAGGCGCGTCACAAACCCACGCCGGGCCGCGGCGCCGGCACCTTCCAGCGCGCGCGGACCGCGTCCGGAAGCGTGCCCCCGCGTGGGGGCGGGGCTGTGCCGCGCTGCCGGACGCTGTCAGCCGGAGCCCGTCCGCAAGCCCGGACTTTGTCCGTAGACTTGGCCGCGCACGGGGGCGGGGCCTACTCGCACTGCCGGAGCCTATCGAAAGGAACAGGAGAAGGCCCGCCCCTCCGCGGCCGTAGGTTCTCAGCAGGCATGCGCGGGCCTCGGCCCAACCCTGCAATGGTGCGAGGAAGACCCGGGGTCTCGGCCGGGAGCGGGGGCGTGGCTGCAACTGTTGACTGGCCCTGCGACTGGGTGCCCCTGGGAGCCTGCGGCCCCGCTTCCAACACGCCAATCCCGCCTCCTTGCCTAACACCGTCCCCTGAGCGGGGATCCCCTCAAGTTGCCTGGGGTCCCCCAGCCCACCAAGTAATACCCTTAAATGCAGGAGGCGAGGGTCAAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424:ENSBTAT00000050083:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.747
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(40.0=90.9),PF0002325=Ank=PU(0.1=0.0)
A:
NA
C2:
PF0002325=Ank=PD(93.9=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAACAGCGCTGCACTGG
R:
GTCAGCAGATCCCAGTGGTTG
Band lengths:
250-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]