BtaINT0103609 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001864 | NR4A3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr8:65356670-65359785:+
Coord C1 exon
chr8:65356670-65356869
Coord A exon
chr8:65356870-65359606
Coord C2 exon
chr8:65359607-65359785
Length
2737 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CCGACGACTTTCTCTCGTAGGTC
3' ss Score
8.48
Exon sequences
Seq C1 exon
TACTGTCCCACTGACCAGGCTGCTGCAGGCACGGATGCTGAGCATGTACAACAGTTCTACAACCTTCTAACAGCCTCCATTGATGTATCCAGAAGCTGGGCAGAAAAGATTCCCGGATTTACTGATCTCCCCAAAGAAGATCAGACATTACTTATAGAATCAGCCTTTTTGGAGCTGTTTGTTCTCAGACTTTCCATCAG
Seq A exon
GTAATTACTATTCTTTTATCTTCCTTTAGTCCACTCCTTCCTTTGAAGAAGTTTGAAACCTGCTGGATTTTTAACTAAGTCAGTGGTGAAAAGTTTGCTCAAGAAGTACATATGTAATATGACCAGGCATTAAAAAAACTGAGCAGTGGATCGAACACTGGGCTGGTAGCCAGTTTTCCTGGGTTCTAGTCTCAGTTTTAACAGACTTGTTGTAAGACCCTAAGCAGATCACTTGCTTCACCAGAAATCTAGTTTCCTTCTTCATAAAATGAGAAGGTTGGATTTGGCAATTGATGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAATCTGCCTGCACTGCAGGAAACCTGGGTTTGATCCCTGGATTAGGAAGGTTTCATCGAGGAGGGATAGCAACCCACTCCAGTATTCTTGCCTTGAGAATCTCCATGGACAGAAGAGCTTGGCTGGCTAGTCTATGGGGTCGCAAAGAGTTGGACACGACTGAGCGACTAAGCACGACACACAGCAAAGCCCCTTGCAGCGCCATCATTCTGTGATTCCAGGAAGATTCTCTTGGTACATAAGGTATTTCCTGGGAGCAAGTGTTTTCAGCTTTGCCTTTACCTCCCAGGTTTCTATTTAGTGTTACTTTCTGATACACCAGAGGGGGCGCTAAAGAGTTCCCACAGCTTTGCAGCCTCCAGTATTTATTCCAAGAGGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTTGGACACGACTGAAGTGACTTAGCAGCAGCAGCAGCAGCTTCTGGATCAATAAATTTGGTTCACCTTACCGCACTCAGTGACATCAAAAACAAACAGAAACTAATTTTTCAAAAAGCTAGAACCTGGAATCTCAGCTTCTGCCATAAAGTTCACATGTAGCATTTTAAATTCTATCTTCCTTGCTTCTTTTCAGTATAGGAGATGGTACCAACATTTTACCAATATTATAGGAAAAACCATCACTTTTCCCCTCTTTCTCTTCCCTGCTACCCACTCCCCAGTTTCACATCATGTTACCAGAAACTCTCATTTAAGATGCAAATTCCCATGCCTCATTCCCAGCTGTTTTGGTTCGGATCTACATTGAAGCAAGTCTAGAAATCTGCTTTTTTTATGTATTTATTAATTTTTTTAAATGAAAGATGAATATTTTTAATGATGAAATGTACAATTCACAAAGAAGATAGACATCGTAAACCATTAGACACCTAACAACAAAGAAACAAAGATACATAAAGGAAAAATCAGAAGAAATATGAGGGAAAAGAAAAATATATATAATCATGTGTGACATATTAACTTAGAAATCTGCATTTTTAAGTCATATTCTAGCAATTCTGATGCCACTGGTCTGAGGTCCAGGTTTTAAACCCTGAGATTGAATCATTCTGTTCTGTGCATGCATGCCTCTGGGGAGGGATCTGTGGGAGAGACCAAAGTGGAGTTACAACCAGACTGCCAGTAATTAGCATAATTACAGCCAATCCTGCATGTGCAGGAGCCAAGCTGAATCAGCAATATGACTACTATCTATTAGGCAGGCAGCAAAGGATTAAGTCCATGATCAGCTCCATGAGGGCAGACACCATGTAGGCCTATTCATCAGGTTTTCTCCAGTGTCCAGCCAAGGAATGGCACTGGTTTTGTGCTCAAGAAATATTTGCTGAGTGAATGAATGAATGAAGTTATTTCTCTAAAAAACACAGTTAAAAAGACATTAACATGTTAGTGCAATGGGCCAAGAGAGAGAAATATGTAGCAAGAGATTTGAAAATTAAAGGATTAAGTTAAGGTCCACCTAAAATTCAGAATTAGTTACACCTAACACTGGTTGGGCTCCTCTTGTATTCAGGCACTGTGCATAGACTTTCAAATTCTTTATTTTATTTAATTCCCACAACATTCTTTGGAGGTAGCAATTAGAATTCTTGTTTTATAGATAAGGATAAGGAAATGCAGAAAGATTAAAGGAGTGCCCAAGGCTCCACAGAGAAGTGGTGCTAACTAGAAGTTCCAGGGTGCCATTCCTGAGAAAAGAACGGGATCACTGCGGACATAACATAAACTATCAGGATGGATTGAGAAATAGCCGTCTACAGCCCCACTGTTAAAAGCGGAGAATGTAGTACAAAACAAGGACTCTTTTTACTTTAGATCATTGTTCAGTTTATGATTGATTTCTGGCGCTTGAGAGGACTTGGCGTTTTTAGAGTCTGCACAATGGAATTGTAGGGTCTAACCTCGGGCCTTATCAGTTTTCGACATTTAAGAAAATGAAAGAGAAGTCCCGGCGAAGGAGCACTGAAGGGAACAGTCTCATGTTCATGGCACAGAGAGATAGGGCACTGGGCTTCGCTTCCAGCATCCATCCCAGGGCAAGCCAGAAACTGCTTCTAACCCTAAGAGAGCAAACACCCTACTCTGAGCATCTCCAGGGCTGAGGCTTACCAGGGAAGTCAGCAGACCACTAGCAGTGGTTGTGTATCCCAGGGTTGTTCATTGAGGGTGTCTGGGCGGGTTTCACGGCACCACACTGGGTTTGTGAAGGCTGCCCAAAGCTGTGCGGGTACCGGTGCATTATGATGTTATCCCACTGGACAGATTGAACAGACCTATTTTTCTGTCTCTATCCTCACCCCCCGACGACTTTCTCTCGTAG
Seq C2 exon
GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCGACTCCATTAAAGACTTTTCCTTAAGTTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGCATGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001864:ENSBTAT00000002429:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(33.3=91.0)
A:
NA
C2:
PF0010425=Hormone_recep=FE(32.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]