BtaINT0105377 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57831524-57835249:+
Coord C1 exon
chr3:57831524-57831640
Coord A exon
chr3:57831641-57835063
Coord C2 exon
chr3:57835064-57835249
Length
3423 bp
Sequences
Splice sites
5' ss Seq
AAGGTTATA
5' ss Score
1.81
3' ss Seq
CTACCACTGATATTTTTTAGAGC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GCAAATGCTTTGAAAGCAAGCCGTTTTTCACAATCAGTGAAAGTAGTACATGAACGACTGCAGTCCCAAATTCATAAAAAGGAAGCAGAGAATGAGAAATTAAAAGAACACATAAAG
Seq A exon
GTTATAAATACTCATCCATTTTTATAGTTTTAAGTGCTAACAGTAATGAATGACAATATAGTCTTAATTCTGGTTTTGAAAGAATTCAATTTAAGTGTTGCCATGGGAAATCCATATTTGAGGCAAATCTTAACATTTCTGGTCTTTCTAAAGATTTGGCTCCAGATCCTAATATGAAAATGCTCTCTCTCTGTAGTACCGATCTAGGAAGGATTTGTATAAGATTGAATTACTTAAAAAAATCTCTATTCTTAAATTATATTTATTTGGAAAAGCTATTAAATATAAGAGAAAATTAAAATAACTTAAAAATACTGAAGCTATTAATATTTGGTATACAGTCATCCCTTTTATGTGCCTATAATATACTTAAATACTCTTGCACTTATGTAATGAGACAATAATGTTTATTATATTGATTTTGTTGCTAATAATAATAACATTAAGATCAGGTAACCTAGCATTGGTGTTTAGATAATCAAGTAACCTGTTATACAGCTTTTTTAGCAGGGTAATTAAGAGGAATTCTCTGGTTTAAACTGCATAGTTTAAATATTCTTGTGGAAGCCTCACAGTCACTTTGAGGTGAGAGTTTGAGGTTGCTGTGGTATGACACAAGCTAACTGCATCTACTGTCATTTTTGCTAAAGGAAAAGAAGCAATGTGGCCACTTTTGAAAGAGAAGTATAGAAAGACAAACCCCATTGAGTGTGAGGACTTCTGTGCTGGATTTCTGTTTGCTTTTATCTTCCTAATCATGGCAGATGCCTGTAGCCCAGGCACTTGTTTTTCACAACTGCATATCAAGGTTGTTTTTCCTTTTTTCCTTCAGTGGCAAAAAGCTTTTGCCCATGAAAGAGACATTAAGCAGACTTATGTGAGACATAAACTTTGTCTTTTGTCTGCCTTTAGGTGCTTTTTAGCACTTTCCCCCAGAGATTCCCTGTGTTCTTTGCGTCCGTGTCTTAGGGCACTGGAGATGAACTAGAGTTGGAATTGTACTGCTCTGTCATGGTAAATATAAGAGAATACATGTAATTTAATATCTCAGATTATCTACTACAATTTACCTTTTTTTTTTTTTAAAAATTATGTCCTTAAAGAGCAGTTGGGGAAGTTCTTGAAAATATTTTCTTTAGTTTAAAAATGAAATAGTAAACATTTTTTTGAGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGCATGCACAGTGAACTAACTCCGTTTGCCAACATAAATCTCATTTTTTTTAGTATTGTTGATGACTCAACAATTATATTGGGTCTTTTAAATTTTTTAGTTACATTATAATTCCTTGAGAACTACCTTAAAGATACTTTGAACTCATTTTTCTTTCTAGATCTTTAAAATATGTCAATTAGAGTTAGAAGATTTTCACATTTTAGAGGAGACAGGATAATTATCTTTATAATATACTGCAAGTATAATTCTTTGGAAAGAGGAAAAGGCAAATAGTTGGTTTAAAATATATATCCATTCATTTGGCAAATGACTGTGACGGGGTTATTTTGAAACTATAAAAATAATTTCATAGTTTCAGCACACTTCCTAATAGTGGTTGAGCATGGGATTTGATAATCTAGTAAGAAAGTCTTGTGGATCCATGTTCAAAGAAACTCTATTTTACCCTTAGTGGTAAGTGTGCCTGTCATTCATGATGTGGTGATGACACCCTGTGGTTTCTTAGAGAAAGTACAGCTGTTTTTCTTGGGTTGGGAAGGGTTCTTCCTTTCTCTAAAGCTGACTTAACTATATTGCAGTTTGTTTTCCTTGTTTACTTGTTAAAATGGGGTTTTTTAGTTTATAGAGATTTTAAAAGACAATTTAAGAATGTTTTGCTTCTTCTCTTAGTTTGTGAAGTTACTTTTCAAAGAGATCAAGCCTTTAGATCTTGTTTAAGATGTATCTCTTAAACTCAGTTTTACTGAAAATTAAGTGTAGTTTTTTGTTGATCATAGGTAGAAAAGCTCCATCTTTTACTGTAACTCCTTTGTTTTTTTTTTTATTAAAATGATTGTCCAGGAAATGGAAGACTAAAACTTAAAGTCTTTAATAATTTTGCATTCTTTTCTGAAACACACAACTTTTAAGAAACGTAGAAACGTTAAAACCTTAAGTCTTTAAGTTCTTAGTACTCAGATGCTTTAAAATACAAAGTAACAAAGTGAGCAATGTATTTTCTTAATGTTTGGTTATTTGGAACTGATTCCAGATTTCTTCCTGTTTCTAAAGTGTGTGATTTAAGGGCCATGTGGGTATAAATTACGAAATAGGGAAGTCTCACAATTTTTGATTTATTCACAACAGTGTGTTTCTTCTTGCTGTATCTGTGGTTCATTGTATTAGGCTTATGGCCTTCTAGGTGGACTAGGAATTCATTGATCCACTAAACAATAAAATCCATGTGAGCAAAGAAAATAAAATAAAATACAAAGTTTTAAGATAATTTGAAATTAAAACTTGAGTTATCACACTAAATCATATTCATCATCGACCCAACCTAATATTCTGTGTTTAGTTATATCCCCAAGAGATATGTAAGGAAAGTTATGTCAATTAACATTATCAGACTCAGTGGATAAAAACATGCCTTACCTTTGGGTAAAAAGATAACCAAACATCTTTTTACCCTTAATGACTCCTACTGATCTGGTAGTCCTTTCTGGAACCCTGTGTGGTCTTAGAATAATAGCTTCACTAAACTTACTACTTACTGGGCAAAGTAGTACTTTTATTATCTTGATGTAACTCTTTGAAATGTCAAGACTTCCCCCTTAATTCTAGTAAATTAAAATATAGCAAATAAGTTTTTGTTTATACTTTTCATAATCTATAGATTTTGATTATATATCCTTTAAGCATTTATAATTTGAACTAGAGTCCTAATATATTTGGGGAGCTACTGATTCCTTTGAGCTTTATGTACCTACTGTTTGAATTGTCTCTGGCTTAATTACATTGTTTTTTTTTTTTTTTTTTGATTTGCAGTAACTAGTGAGTGCTATATATAATATTCTAGATGTGAAATTAAAAAATTCTAGTTAATCAAAAAGGTTTTAAGGGAATTAGTGTTTCTGCCATAATCACCAGTATTAGCTTCTTAGTAAGAGTAGTATTAGCTTTATATAGGTTTATACATTTTAAATTTGCACTGTATAACTGGTTACAAATAAACATTGGTGAAATCACCTTTCTTCACTGTTTTGCTTTTTACTAAACTTATTAGTCTTTTTCATAAATTCTATGTGGGAGATTACTTACATATTTTAACAATGTTTATGTCAACATTGACATTCTAAAATAACTACCACTGATATTTTTTAG
Seq C2 exon
AGCTTAGAAACCCAAATATCAGAATGGAATTTGCAGTTGAAAAAGAATAAGTATGAGGCTGTAGCAATGAAAGAATCAAGTAGGCAAAAAACTATTGCTCTAAAAAAGGCATCTAAAATTTACAAACAAAGGATTGAACATTTTACTGGAGACATGGAAAACCTTACTTCCCAAATTAGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907:ENSBTAT00000017157:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]