BtaINT0105835 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48368251-48373941:+
Coord C1 exon
chr2:48368251-48368337
Coord A exon
chr2:48368338-48373832
Coord C2 exon
chr2:48373833-48373941
Length
5495 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
TCTGATCTGCACTTCCCTAGATG
3' ss Score
7.91
Exon sequences
Seq C1 exon
AGTCTCTCAGAAGATAGAAGTGTGAAAGAAGTGCTGCAGAAGCATTTTAATGTCAGCAAAAACCTGCGTTCATTACACATGCTACTG
Seq A exon
GTTTGTATTAATTTTATTTTTATTCACTCATTCTCTTTCACCAGGTAATTATGTTCTGATGGGAACTGGTTAAACCTCTAGATAAATTTTGTGAGAATTAACATATATACTACGTTAGGTCTTCCAATCCCTGAATATGGTACATCTCTTTTTTTATTTAGTTCTTTGATTTCTTTTATCATCATTTTATAAATCTCACCTCACAGATCCTGTGTATGTTTTCAGTGTTTTCTTAAGTGTTTAACTTCCTTTGGAACAATTGTAAATAATACTTTGTTTTTACTTTTTGTCTTAGCATTCTCACTGATCGTATATAGAAATGTGATTTCTTTGTTGTTGATGTTATTTTCTGCAGTATTGCTGAACTCATTTAGTTAAGTTTTTTTTTTAATAGACTTCTTGAGATTTTCTATATAGATAATCATGTCATCTGAAAATAGTTTTTCTTTTTACCTTTCTAATTTGTATATGTTTTATTTCTTTTTCTTTTTTGCAGTGGCTAGAACTTGCGCTATATTAAATTAGAATGGTGCGGGTGTATAATTGCCAAGCTTAGGGCAAAAACTTTCAGTCTTTTACTATCAAATATGATATAAGCTGAAGCTTTTTAATACATGTTTATTGTCAAGTTATGGCAATTCCCATCTATCCATAAATTGCTGAGAGTTTGTTGTGATTGTGTTGGATTTTGCCAGATGTTTATTTTTTTATCCATGAACATGATATATGACTTTTCTTGTTTAGCTTGTTATATTGAACAACATTGCTTGATTTTTTTTTATTTCTGCCATTTCAAAATCTTTTTTATTGTAATGAGTAAGTGGAAATCGAGTACACACACTTAAGTGCATGAAATGCGCAAATCTCTTAACATGACCTAATTTGTCTTCATATATTATTGTTATTTCTCACCTTCTAATATCTTGGATCCAAATGTTGAACTAGCTTTACATGCCTGGACAAATCCTACCTGGTCATAGTCTTTCACCAAATAATTCTATCTTAAGTTTAAACAGTATCAAGAAAGGGGTACTTAATTTTTCTGAAAAGTAAACTTCCTTCGCTAGAGTATTTGATACTAGACTACTATTTCTAGAAAGTTATTTATTCATTATTATGAAAGGTATAGCAAATACCTTTCAAAGAGAAAATAATTTTGGTTTCATGAGTTTCTTTTTGGTCACTTCCATTTTATGATAATAATGGGTATCACTTATTAAATAGCACAAAGGTCAGGTGACCTAGTTACTTTGTGTGTTAGTCGCTCAGTCATGTCTGACTGTTTGAGCGACCCCATGGACTGTAGCGCGCTTAGGCTCCTCTGTCCATGAAATTCTCTAGGCAAGAATACTGGAGTGGGTTGCCGTTTCCTGCTCTAGTTATGACCAGCATTATATCTTACCATTATATTAATCCTGTTTTTTTGTTATTGCTTTTTTTTTTTTAATGTTTGGGTGTTATACTTACCTTTGAGGTAACTGATGTTCTTTGAGGTTAAATAACTTACCCCATGTCACACAGCTAGTAGATAACAAACCCACGACTCAAATCCAAGTCTCTCTGGCTTCAGGCTTATCCTGCTTTACTCTTACATGGTTCTGTCATGTTTTTGTTTTTTCTTTTTACAGATTCTCCTTCTCCATTTCTGGTTTTGCTTAGGAAACTTAAAAGAATTTTCCTCCCTGTGTACTTACCCTCTTATTAGCACATCCTCCTCCCATTTATCAAAACCATCCTGCCATTTTTAGCAATAGCTGTCTTTATCACAGAGGTATTACAAAGACTAAGAATTTTTAGAGTAGAGACTTTAGTAATTTAGGTACCTGTGTTTACTAACTTATGGTATTTGGAGGATACACACACACACATACATACAGAAACACATACCTCTCATTGGAGAAGGGATAGGATACCCACTACAGTATTCTTGGGCTTCCCTGGTGGCTCAGTCAGTAAAGAATCCACTTGCAATGCAGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCGTGGCAACCTTGCCTGGAGAATTCCCATGGATACAGGAGCCTGATGGGGTACAGCCCATGGGGTCACAAAGTTGTACATGACTGAATGAATAAGCACAGCATAGCATACCTTTCATTCTGGAAAAATGTCTGGCTCAAAATTGTCAACATGAGAAAGCACTGTTTTGCTAGTTTCCTATTATATTTTTAATTCAAGGTGATGGCTTAATTTTTGTTTTGATTTTTCTTTTTTAAGAAAAGTTTTATGTGAAATGTCATGTATGAAACGAGATGCCAGTCCAGGTTCAGTGCACGATGCTGGATGCTTGGGACTGGTGCACTGGGACGACCCAGAGGGATGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGATTTTCTTTTAAAAATTTAAAATAAATTAAAAAAAAATAAAAATAAAACCAGCTTGAACATCAAAAAAAATAAAAATAAAAATAAAAAAAAAGAAAAGTTTTGTAAATGGTAGAAATTATAAAGAAAATAAAGACTGAGATTAAATATAGTTTGCTAATTTTTCAATAAAATTAAGGAGTTATACACATGGTAAAAAAAGTACCCTCAAATGCATAGCCTAAAGGTAATTTCAGATTGATAAACCTAAATATATGTATAAAAACAAAGCTTTTTTTTTAATTAGAAGAAAGATATGTTTGTATACTTGAAGTAGGAAAAGATTGCTTAGAGAAGTTGCACAAATTACAAGCCATAGGAGAAAAGACAGTTAATGTTAATTATATTGAATTTTTTGTTAAATGTCTGGACACTGGAAGATACCATAGAAGAAGTGATTAGGAGATGAAAAATGCAATGCATGTAATCATCAACACTGTCCATAATGTAGAAAAAGCTTCTACAGTAATCAATAAAGGAACAAACTGTGAATATGAGTGAATATGAGCGAAAGAACTAAGAATAATCTACCAGTGTAGAATCCTACATGATTTATAAGTTACAAAGATATTTAACTTCTCCAGTATAGGGAAATGGTGTACAATTTCAATTTTACAATTAAACCTTTTTTTTCTGCCAGTTTGGTGGGTGTGCAAAGTTTATGTCTGATGGTATGGTGTCTGTGTTGCATAAGTTCAAGATGATATTTATATAAAACTTGAAAATTACTCTGTATTATCTAGGAATACAAAGATATGTAGTAGAAGGATGAAGACATGCATGATTTTTTTTTACGTGGAGAAGAGTAGAGAGTCCAACCAGGGCAAGAGACAGGGGCTTCAACTCTGTAAGTTTATATTTCATAAGCTGAGGAAGTGGTCATGAATATTCATTATATTACTCTCTTGCCTATTTATATGTCAAAAATATTTTATAATAAAAAGGAAAGGTAAGAGAATGGAAAGGAGCTACTGGGTTCCTGGGTCCCTCCCAGTAGGGAAATGAAGGTCAAGGATTACCAAACTCTTTTGTTCAATTAAGGACCCTGGGCCCTGGTTAAAAAAGGGAGAGAGTTCAAGGCAATAAAAGGCAAAACCACTACAATATTGTACAGTAATCAGCCTCCAATTAAAATAAATTTATATTAAAAAAATAAAAACAAAAATAAACAAATGGAACCTACTGAAACTTACAAGCTCTTGTATAGCAAAGGAAATCCATAAACAAAATAAAAAGACAACCTGCAGAGTGGGACAAAATTTTGCAAATGGTGTGACAGACAAGATCTTAATTTCCAAAATACCAAACAGCTCATACAACTTAATAACAAAAAAAAGCCAACCGAATCAAAAAACGGGCAAAGGAGCTAAATAAATACTTCTCCAAAGACGATATACAGATGGAAACAGGCACATGAAAAGATGCTTAAACTCACTAATTATTAGAGAAATGCAAATCAAAAGTACGGTGAGGTACCATCTTACACCAGTGAGAATGGCCATCATCAAAAACGCTATACATAACAGATGCTGGGCAAGGTGTGAAGAAAATGAACACTCCTACACTGTTGGAAATGTAAATTGCTCCATCTACTATGGAAAATAGCACGGAAGTTCTTTAGGAAACTAAAAATAGAGTTGCCATATGATCCAGTAATCTCATTCCTGGGCATATGTTTGGACAAAACTATAATTCAAAAAAATGTACACAAACACACTTTCATAACATCACTATTCACAGTAGCCATCACATGGAAACAACCTAAATGACCATCAGCAGATAAATGAAAAAAGAAGCGGTATGTGCATAACTACAGAATACTATTTAGCCATAATAAAAAGAATGAAATAACGCCATTTGCAGCAACATGGATGGACCTGGAGATTATCATACTAAGTTAGAAAGAAAGATAAATATCATATGCCATCACTTCCATGTGGAATCTAAAATAGGACACAAATGAACCTATCTACGAGACAGAAACAGACTCAAAAGCATAGAGAATAGGTCTGTGGCTGCCGAGGGCACGAGTGGGGTAGGTTGAGAGTTTGGAATTTGCAGATGTAAACTATGATATGTAGAATGGATAGAGAGCAAGGTTGTACTATAAGCAGAGGGAACTATATTCAGTATCCTGTGATAAACCATAATGGAAAAGAATATGAAAAATAATATATATGTATGTATAACTGAATTAGTTTGCTGTATAGTAGATATTAACCCAATATTGTATATCAACTATACTTATATAAAATAATTTTTTTTAAAAAGGGAGGGAGTTTCTAATGTAAATGTCCCAACTATTACATTACATATATAATATGTAGACTTAAGGAATTGCTCATTGTTTATGTGGAATTCAAATTTAATCAGATACCATGCATTTTTATCTGCTGATTTTATCTATATGAACTAAATGCAGAGTCAGTTATATTTCAGTGAAAAATAAACTTTAAAAAAAATTTAGTTGTTATCAAAGTTACAAATAAAAACTTCAAATGCAGAAGTTTTGTTAGTTGTTGAGCAGATAGCTTGCTACACAAAAGCAACTTGCTCCCTGCTTTCCAGGAGAGTTGTTTCTGGGTATAATTTTATTTTTGTTTTTTTCTTTTTAATACAATTGAACATCAAAGTGGCTGAGTTCTGTCTGTCACATAAGACTAACCTGGATTGGTTGATTGGGTGGTGAGAAAGTTTATAGAAGTCATAGTTCTGCCTTTTTGTTCTGGAGCTTTGAATAGTATTCTTACTTATTTTTGGTCTCTTCTCCTCACTCCTTTTAAAATGTTTTTTTCTTCTTTTGAGGATTTGTAATCAAGATATGCAAATAGGAAGAGGTCAAGAGAGCAGCAAGAAGTTTTTAATGCTTTATTTACATTTATACATTTATGTGGCTTATGAATTGAAATACTGTATTTAAATAGAGCTAAATTTGAGAGTAACTTTCCCAAGTATTAATATTTACTCTTTCATAACTCTAAATTAAGTTTTCTTCAATAAAATACCCCCAAATGCCCATGTAAATATGCATTTCTTTTTCTGATCTGCACTTCCCTAG
Seq C2 exon
ATGCTTGCTTTAAATCGTGTAACACCGTCACACCCATTTATAACTGCAGCAGATCTAATGGAGGCAAACCAGCTGTGTAGCATGGACTCAAAAGGAAATATTGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291:ENSBTAT00000020335:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=FE(14.6=100)
A:
NA
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]