BtaINT0106275 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35418870-35419250:-
Coord C1 exon
chr15:35419175-35419250
Coord A exon
chr15:35419049-35419174
Coord C2 exon
chr15:35418870-35419048
Length
126 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
CACCCTGCTCGCCCATCCAGTGA
3' ss Score
7.54
Exon sequences
Seq C1 exon
TGGGAGAAGTCCCAGCTGGACGAGGCGTTCATGCGCAGTGCGGAGAACGTGTGTGGCTGCGCCAAATATGAGTGCG
Seq A exon
GTAAGTGGGGAGGGGAGAGCTAGGGAGGTAGAGCAGGTTGGGCGGTCCAGGGCTGGGCCAGTCAGCGTGGGGCTGGTAGGGGTGCTGGGCTCTTGCTGACTGTCACCACCCTGCTCGCCCATCCAG
Seq C2 exon
TGAAGGCCCCCGTGTGTCTGAGTCGCGAGCTGGGGGTGATGCAGCCGGGCCAGACGGTGGTGGAGCTCTCGGCAGATGGTGTGTGCCACACCTCCCGCTGCACTGACGTGCTCGACCCTCTGACCAGCTTCTACCAGATCAACACCACCTCCGTGCTGTGTGACGTCCACTGTGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987:ENSBTAT00000064728:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGACGAGGCGTTCAT
R:
GCCTCACAGTGGACGTCAC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development