BtaINT0106464 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005365 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr5:80536670-80537584:+
Coord C1 exon
chr5:80536670-80536742
Coord A exon
chr5:80536743-80537388
Coord C2 exon
chr5:80537389-80537584
Length
646 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTGCTTGCTCATGATGCAGGTG
3' ss Score
6.94
Exon sequences
Seq C1 exon
GAAAAACAATCCACTCTTCTGGACCATTGTTGCTGGAGACCATGACATAACCTTGAAGGAATCAACTGAGCAG
Seq A exon
GTGAGAAATGTTTTTAAAGGTCATTCTGCCTGTTCCCTAAATTGTCACATGCCAGGGAGTACATTTGGGCTTCCCTTGTGGCTCAGCTGGTAAGGAATCTGCCTGCAACTCAGGAGACCTGGGTTCGATCCCTGGATTGGGAAGATACCCTGGAGACGGGAAAGGCTACCCACTCCTGTGTTCTGGCCTGGAGAATTCCTTGGACTGTATAATCCATGAGGTCGCAAAAAGTCAGACATGACTGAGCGACTTTCACTTTCAGGGAATACATTTATCTAAAACATGGGATTAGTTACTACTTTCCTAATGCCCTCTTACACTTATCATTTATACCAACATTTAAAGATAGAATTTGAGATCACATTTAATCTGAGAATGAGGGGAAGTGAGTCAGGAAGTGCAAACTGAGGTCCATGTACACAGGTCCACAGAGTCTAATTTTCCCAGGACCTCCATTCCTCAGAAAGTGCTTCATGGATTCCTGCAAATTATTAACAAAGATTTCCCTTCTAAAGTTAGTACAAAGTCACCTTCATTGGGTGACGTGTGGAAATGCAGAGATTTAGGATGATTTTGGACCAGTATACAAGGAATTTGTTTGAATCATTGACTCTGCCTTGTAATTTCTTGCTTGCTCATGATGCAG
Seq C2 exon
GTGAGAAGGGCAAAACACATCGTGATGCATGAGGACTTCGACTCACTGAGCTATGACTCTGATATCGCCTTGATCCAACTGAGCTCTGCCCTAGAATTCAACTCAGTGGTGAGGCCAGTATGTCTTCCACACAGCTTGGAGCCTCTGTTTTCTTCTGAGATTTGTGTTGTGACTGGCTGGGGAAGTGCTAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005365:ENSBTAT00000007060:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(10.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAATCCACTCTTCTGGACCA
R:
ATTAGCACTTCCCCAGCCAGT
Band lengths:
262-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]