BtaINT0106486 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45622565-45622722:+
Coord C1 exon
chr15:45622565-45622574
Coord A exon
chr15:45622575-45622628
Coord C2 exon
chr15:45622629-45622722
Length
54 bp
Sequences
Splice sites
5' ss Seq
AAAATCAGT
5' ss Score
-6.2
3' ss Seq
GTAAAGTGGAGCCTTCTCAGCTT
3' ss Score
-6.61
Exon sequences
Seq C1 exon
CTTGATCAAA
Seq A exon
ATCAGTTAATGTATTCATATTGTCAACTCTAAATGTAAAGTGGAGCCTTCTCAG
Seq C2 exon
CTTTCATTTCAGGACCTAAAAATAGAAGAAAATGGAGACTGCACTTCCGACTATGTGAGCGTGCACAGGGATGTAGAAAGGAAGAAAGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(2.7=100)
A:
NA
C2:
PF0043115=CUB=FE(34.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development