BtaINT0106530 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101178113-101180052:+
Coord C1 exon
chr5:101178113-101178324
Coord A exon
chr5:101178325-101179842
Coord C2 exon
chr5:101179843-101180052
Length
1518 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
GCTTGTACTGTTCTGTGCAGGAT
3' ss Score
7.92
Exon sequences
Seq C1 exon
ATAATGTGATATATTGGGGAAAAGCGAAGAAACTCAAGACAGAGGCATCTCCACTCTTTATTCCTTGGGCACCTTCTGCTGAGATAGAGAAGACTTGCTATGTGCTGTTGGCTATCATTTCCCAGAAAAACCCTGACCTGACCTACGCTAGTAAGATTGTTCAGTGGCTTGCCCAACAGATGAATTCTCACGGAGGCTTCTCCTCCCCTCAG
Seq A exon
GTGATTGGTGTGGATCTACTAACATAACCACAATATGTTCAATGCAAAAGATGCCACTCTATAATAATGTAGATAATATATTATATAGATATATATAATAAAAATGCCAAAGGTAGGAAATACCTTCTGAGACAAGGAATATTTGCTATTATAAATCATCTTTATTGGGGTTTAGTTGCTTTGCAATGGATTGGTTTCTGCTGTGTAATGAAACAAATCAGCTATATGTATACATATAGCCCCTCCCTCTTAGACCTCCCGCCTACCCCCACCCCAGTCCACCCCTTTAAGTCATCACAGAGCACCGAGCTGATCTCCCTGTGCTCAGTTCAGTTCAGTCGCTTAGTCGTGTCCAACTCCTTGCAACCCCATGAATCACAGATGGCTGGATGGCATCACTGACTCGATGGACATGAGTTTGAGTAAACTCCCTGTGCTACTAGCTATCTATTTTACACATGGTAGTGTAATTATGCCAATCCAAATCTCCCAATTCATTCCACCACTTCTTCCTCCACCCCATGTCCACACATCCATTCTCCACATCTGTGTGTCTATTCCTGCCCTGCACATAGGTTGATCTGTACCATTTTTCGAGATACCACATGTATGCATTAATATACAATATTTGGGTTTTTTCTTTCTGACTTACTTCACTGTGTATGATAGTCTCTAGGTCCATCCACGTCTCTACAGGTGACCCAATATTTAGTCAACAAGCATTTATTGGGCAGTTCTTGTATACCAGGAACTCTACTAGGAATTTTCTGTGTACAAATGAATAAAATAAAATCCCCTCTCAGGGAATGTATGCCTGATTTATATCTCCATTTACACAGTAAAAATAGAACGAAAGTCTAGAAAGGATGGTTGTTATAAACACAAGAGCCCTGACAATAAGAATACTTTGGTCAAACCGTTACTTCACGTCAGCCAAGAAGTAATATTTCTCCCTACTTCTGTGGTCTATACATTGGAAAAAGCAAATGAATGAATAGCCAAAGAAATGGGTATCAAAAACAATGGCTTATGTCCTTCTTTAATAGGCAAAAAAATTTATTGCAAAGAAATGCAAGTTTTATTCCCACAAGGAAAATCATTTCCTTCCTTCCTTTCTTTTTTTTAGTCTTAGTTTCTGAGTAAAACCATATGTTAGTGAATCTCCCAACATCCTTTCTGGATTCTGACTTCCCATCTTTGAAGACAGTTGAACATAAACATTATCTATGGCAACCAAATTACATAACACCTTAATTTTTAGAAAAGATTGAGCACTATTTCACATGGATATTATAAAATTATTGAGAAGACTTTTAGATCTAATTAAGAACTGCTGAAGAAAGTGACAACAATTAGCACAAGCAAATCTGTTTTTCCTGTTGTTTAGAATACTGTTTCTTGGTGTTCTGTTGACATGTCAGAAATATTTCTATGGGTTGATTTAAAGTTCATGGCCACATGATGACTAATATTGCATCATAACAGAGCTTGGAATGCTGCTTGTACTGTTCTGTGCAG
Seq C2 exon
GATACGCCCGTCTGCCTTCTTGCCATAACCCGCTACATGAATTTAATCTTCTCTGATGATCAAGTCACTGTCAGCTTAAGCAGTGAAGAATTCAACAAGATTTTCCAGGTTAATGGTGATAATCACTTACTGGTTCAACGTTCAGAACTAACAAAAGCAGGTGGACAATACACGGTAGATGTGGAAGGACGAGGTTGTGCATTTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243:ENSBTAT00000037844:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.5=100)
A:
NA
C2:
PF076789=A2M_comp=PD(5.3=18.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGAGGCATCTCCACTCT
R:
CCGTGTATTGTCCACCTGCTT
Band lengths:
351-1869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]