BtaINT0106533 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101180750-101182904:+
Coord C1 exon
chr5:101180750-101180874
Coord A exon
chr5:101180875-101182813
Coord C2 exon
chr5:101182814-101182904
Length
1939 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTTTTGTTTTTAAATTTCAGATA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GCTACCATGAAGTATAATGTGCTACTACCTAAAAAGGAATCTGGATTTTCCCTTTCCTTACAAATAGTAAAGAAAAACTCTTCGGATGTATTCCAGAGTAATTTTGACCTGACAGTAACCCTCAG
Seq A exon
GTAAGTGTCCCATTTTGATGTCAACTCTCAGGTTAGAGAGAAAGTGGTGCATCAGAAAAGAATTATTTTAAACACTAACAAAATATCAAAAGCACTAATTTGAAAAGACACATGTACTCCAATGTTCATAGTAGCATTATTTACGATCACCAAGACATGAAAGCAACCTAAGTGTACATCAGCGAAAGAATGGATAAAGAAGCCCATAGATGGACTTGGAGGGCCTAATGAAGAGCTTCCTTGCTGGCTCAGACAGTAAAGAATCCGCCTGCAATGTGGGAGACCTGGGTTCAGTCCCTGGGTTGGGAAGATCCCCTGAAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTAGAGAATCCCATGGACAAAGGAGCCTGGCGGGCATGTCTGGGAGACTAAGCACAAAGTACATGCTAAGTGAAATAAGTCAGACAGAGAAGGACAAATACTGTACGATATCACTTACATATGGAATCTAAAAAATACAATGAACTACTGAATTTAACAAAAAAGAGGTGGACTTACAGAAATAAAGAACAAACTAATGATTACCAGTGGGGAGAAGGGGGAGGGGGTGTCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAACTATAAATGGAAAGTAATCTTTAAATTGTATAAAAGATATTTATATATTATTGACAATAATCACATGTTGATGGTACTCTCTGTGCCCACATCAAATTTAGTACATTTTCAACTAAATCAAAGTTAGAGTTATGCAAATATAATCTGTACTGATTTGCAGTTGGAAAGCTTCTGCCACATTAATCCTTCAGCAGTGCTTCCACCTTTTTGTGTGTCAGTTTTGCACAACAGAGATACAGTTTTCTTTCTAAAGACAAGCATGGGTGTGTCAAAAAGAGAAAACCTGCTAACATTTATTTAATCATTAATATAACTGTATACAAAGCAAAATTTTAGATGTTTTTCAGTGTAGAAAAGCAAAGTAATTCTCTTGAATTAAAATATAATTTATAGGCACCGAAGAGTTTTAGTCTTGGTTAATGTGTGGAGAAACATTGAGTAAAATTAGTTTTGGGGTTTTTCTCAGGATTTCAAAATGAAAATCTGTTGAACACTAATGCTAATAATATAATACACAGCCCTCAACTTCATGTCCCAACAATCTTATCCCAAGTTGTGGATATAACCTAGAAGATCTCTTGGGGGCATGTCTGTTGTATGATTTTGCCAACATCCTGCTTTTTAGATGCGAGTCTCTTCTAAGTGTTGCACAGAATCTAAAGCTGACATAAGTATGTGTGCTGTGCTCAGTCGCTTCAGTCATATCCAACTCTTTGCACCCTCGTGGCCTGCAGTCCACAAGGCTCCTCCATCCTCGGGATTCTTCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTTCTCTAGGTGATCTTCGTGACCCAAGGATGGAATCTGTGTCCCTTGTTTCTCCAGCATTACAGGCATATTTTTACCCACTGAGCCACCATATGTGTAATATAAGTTTAAAAGTTTTGTCTATAAGTTCTGACTTTAAAGCCTCAAGTAAGTTTAAAAGCAGGATTTGGGGAGATTAGGTCCATTCATTCTTTACTCTAATTTATGTTGCTTTGAATCACCTCAGCCACGATCACTCTAATTGTGCTGGTTTCCAGATGTATGAGAGTGACTATCTTCAGATGTTTTTTCTCCAGCTTTTGCCTCTCCTCCAGGCTTAAAGCCAATTGGCATCAATGTACTCATATCCTTGCCATAAGGTTAAGTCACTCTTCTAAAATGATGTCTAAGTTAGTGTTTTGTTTTTAAATTTCAG
Seq C2 exon
ATATACGGGAACTCACAGTAACTCCAACATGGTCCTTGTTGATGTAAAAATGCTATCAGGATTTACTCCAGTCATGTCATCCATTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243:ENSBTAT00000037844:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCATGAAGTATAATGTGCTACT
R:
CTTCAATGGATGACATGACTGGAGT
Band lengths:
214-2153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]