BtaINT0106537 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101185220-101185868:+
Coord C1 exon
chr5:101185220-101185296
Coord A exon
chr5:101185297-101185725
Coord C2 exon
chr5:101185726-101185868
Length
429 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GAACTGTTTTTAAATCCCAGGTA
3' ss Score
6.79
Exon sequences
Seq C1 exon
ATGAATATGCCCATGCTTCTTACAATATCAACAGTGTTCCTGTTTCTCAGTGAGACAAAACAAAATACACAAAAAAG
Seq A exon
GTAAGGAAATCATATGCATCATGAGTTATTAAAAACATCTTGTGAGAAAATGAAAACCTAGGAAGATAAAACAATAGATGAAGCAAAGAGAAGTCTCTGGTGCTTCACACGGTCTGTACAATTATGCACATTAGGTAAGTACTCTGATAGGACAGCATTAAGATTTTTATTAATGTCTTTAAAATAACTTTAAAGAATTTGAAACTATATGTGTGCTTTTCATAAATGTTTCATTTTTAAAAACTCTCATGTTTGTTTTTTGAATTTCTATGTTATTAATATGTATGTACATATTTTATACACATCATGTGTATGCTAATGTGTATTTGTGGATGTCTGTAAATATGTATTTGTTTATCCACCTCTATGTATGTATTTATATGTACATACACACATTTATTTATTGTTTGAACTGTTTTTAAATCCCAG
Seq C2 exon
GTAGAAAACAATTTACTTTGAATGAACTCATTCTCCTGTCTCAAACCTGGAAGAAATCCATGAACCACCTCACATTCTGAATAGAGTTCACTCTGCTATGAGTTCTTATCAGAGTTCGTTTCAATAAATGCTGTGATTTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243:ENSBTAT00000037844:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=38.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATATGCCCATGCTTCTTACA
R:
AATCACAGCATTTATTGAAACGAACT
Band lengths:
214-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]