BtaINT0106538 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101138895-101141739:+
Coord C1 exon
chr5:101138895-101138926
Coord A exon
chr5:101138927-101141570
Coord C2 exon
chr5:101141571-101141739
Length
2644 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
3' ss Seq
ATTTCTTCTTTATTTTCTAGGAT
3' ss Score
12.38
Exon sequences
Seq C1 exon
ACACTGAAACATATCCAGGGATGGAGAACAAG
Seq A exon
GTGCAAAAATTTCATGATCTAAAGGAACTGAAATCATACAGAGTCTTTTTCCTTACCACTGTGGAATGATGTTAGAAATCAACATCAAAAGATATTTGAAAATAACCCATATATTTTCAAGTGCAATGTGACATTTACCAAGAGAGATCTTTGACTTAGCCATTGAAAGCCTCGATAAAATTGGAAGAATGATAGAACACAGCAGGTGTTTGCAGAGAAACAAGCATTTAAATGAGAAATTAATTATCAAGATACTTTTAAAATCCCATGTATTTGAAAATTAAATGTCCACTTTTAAATGATGGATGTATCTAAGAAGCCATAGCAAGGAAAATTAGAAAATATTTATAATAGAAAAAAAATGAAAGAGAATTTCCCAGAATTTGATGCATGCAGCTGAAGCTGCTCAATAGACTTCTATTTAACCTCTATGTCATCCTCAATATCTTGCTTTATTTTCAGTGGCATTGATTCTTCTCTACCCAGTGACTTCTATTTACGTGTCATCAGCCAACACTCAATCACATGAGTAATTTCCTTACTGAAAGGAAGTTTACAAAATTAATTTAACTTTCTAGATTTTACTGTGGAGGAAAGCAAAAAAATAACAAAAAAGATGAGTAGTGAGAAATGTTTCTGTGCCTTTGTAGATATCTTTTAATCCAGATTTCTTTAATTCAGTTCAGTTCAATTCAGTCGCTCAGTTGTGTCCGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCTTAGAGTTTACTCAAACTTATGTCCATTGAGTCGGTGATGCCATCCAGTCATCTCTTCTGCAGTCGTGCCCTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTAAACTCTTTGCATGAGGTGGCCAAAGTATTGAAGTTTCAGCTTTAGCATCAGTCCTTCCAATGAACACCCAGGATTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAACGGACTCTCAAGAGTCTTCCTCAACACCACAGTTCAAAAGCATGAATTCTTCGGCACTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATAATTACTGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTGGAATATGCTATCTAGGTTGGTCATAACTTTTCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGGTGCAATCACCATCTGCAGTGATTTTGGAGCCAAAAAAATAAAGTCTGACACTGTTTCCACTGTTTACCCATCTACTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAAGCCAACCTTTTCCCTCTCCTCTTTCACTTTCATCAACAGGCTCTTTAGCTCCTCTTCACTTTCTGTCATAAGGGTGCTGTCATCTGCATATCCAAGATTATTGATATTTCTCCTGGTAATCTTGATTTCAGCTTGTGCTTCTTGCAGCCCAGCGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGCATGGTGACAATATACAGCCTTGATGTGCTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATATGGGTTTCTCAAGAGGCAGGTCAGGTGGTCTCATATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTATTGCTTTTTTGATGATCCAGCGGATGTTGGCAACTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACGGTTCACGTATTGCTGAAGCCTGGCTTGGAGGCTTCCAACCCATAATTTCTTTAATTATGGCTGGATAATATCAATACATTTATTGAAGCAGGCTCACACAAGCTGCTAAAAGCAAATGATGGAGGAAGTGTGGCTTGAAGGATGCTTTCTTATTGTGGGACTTCCATTTAACAGTCTGTAATTCTTTTCACAATTTCAGATACAAGTGCAATAAAATGATAGAACTTTCTTTACTTCCCTGAACTACATGTGTTCAGTCACTCGGTCATGTCTGACCCTTTGTATCCCCATAGACTGTAGCCCACCAGACTCCTCTGTCAGTGGAATATTCCAGGCAAGAATACTGGAGCGAGTTGCCATTTCTTATTCCAGGGGAACTTCCTGCCCCAGGGATGGAACCCATGTCTTCTGCATCTCCAGTATTGGCAGGCAGATTCTTTACTACTAGCATCAACTTGCTGTGTTGTGCTTAGTCACTCAGTCATGTCTGACTCTTTGTGACCTCATGGATTTCAGCCCGGCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATGCTGGAGTGGGTTGCCATGCCCTCCTCCAGGGAATCTTCCAAACCCAAGGATCAAACCCAGGTCTCCCACACTGCAGGCAGATCCTTTACCCTCTGAGCCATTAGGGAAGCCCCAACTATATAAAGGATCACAAATTAAAAAGAAAAGGATAATATTCTCATACATCCTGTGCTTTTATTTCTTCTTTATTTTCTAG
Seq C2 exon
GATCCTCAAAACAATAGGATTTTTCAATGGCAAAATGTGACCTCTTCTCAAAATATTACCGAACTCTCATTCCAATTGATTTTAGAACCAGTGTTTGGAGATTACTCTATTGTCGTGAAAGAAAAATCAGGAAAGACATTGACACACCAATTTACTGTTAATAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243:ENSBTAT00000037844:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(11.1=100)
A:
NA
C2:
PF0183514=A2M_N=PD(57.8=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]