BtaINT0106539 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101141571-101142331:+
Coord C1 exon
chr5:101141571-101141739
Coord A exon
chr5:101141740-101142246
Coord C2 exon
chr5:101142247-101142331
Length
507 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
ATATTTCTCTTTGTTTCCAGTGT
3' ss Score
8.82
Exon sequences
Seq C1 exon
GATCCTCAAAACAATAGGATTTTTCAATGGCAAAATGTGACCTCTTCTCAAAATATTACCGAACTCTCATTCCAATTGATTTTAGAACCAGTGTTTGGAGATTACTCTATTGTCGTGAAAGAAAAATCAGGAAAGACATTGACACACCAATTTACTGTTAATAGAAATG
Seq A exon
GTAACCAATTGCTAATTATGATTGTTGTCTTATATAATTGAAATGTCCAAAGAACTGTTCAACAAAATAACTTTTATGTTAGAATTAGACAAATTACATTAAGTTTGATTTGGTTTTCTGCCATTTTCCTTTCTTGTCCTTCTATGTTTTATTGTCTCTGCTTTCTTGCTCATCATTCATTGCCTGTATCCTTATTCTGAACCCTTCCTTTTCTCCTGAGGAAATATCCCATTATTTTAGAATAAAGACAACCATCTAGAAAGGATCTAAAGGACTACAGCAAACAAAATGTGAAGTTCCAAGAATAAGGCAAAGAAAGGAAAGGGGAATTATTAGTTAATGAGACACCATCACCCACTGATGGAATTTGGAGGCGTTGAACCATGATCTATACAGAGGCATACATAGAAAAATGTCATGTGTGGAAACACATTTACATGGTTGTAGTCATTTTTGCTCAGCAGTGTGTGAGAGCTGAAGTCACATTATATTTCTCTTTGTTTCCAG
Seq C2 exon
TGTTGCCCAAGTTTGAAGTTAAGGTCAGTGCACCACAAACAATAACTATTGCAGACGATGAATTCCAAGTCAGTGCATGTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243:ENSBTAT00000037844:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(57.8=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACAATAGGATTTTTCAATGGCA
R:
AGCACATGCACTGACTTGGAA
Band lengths:
246-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]