BtaINT0107728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36679342-36682806:-
Coord C1 exon
chr12:36682726-36682806
Coord A exon
chr12:36679423-36682725
Coord C2 exon
chr12:36679342-36679422
Length
3303 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TTCCTTTGGTGCCTGAACAGATG
3' ss Score
7
Exon sequences
Seq C1 exon
GCAACTCTACATGCGCTGATTCAAGAGAGAGAGTATTCTACAGTGGTGTCAACTACTGAACTTCAGAAGACAACTGGAACG
Seq A exon
GTGAGATTAAAAACTTAAACTGTGCACTCACTGTTTTTGAAAGTTAAAATAATTCTGTATTTTCATATTTAATGCACCACGTCCTTCCTGCATTGTTTTCTGTGCTGACATCTTAGCACCTGATGTGATGTGGAGGGTTGTTATCTCCACAAGCGAGGACACTGACCATCAGTTTCTAAGGCAGCAGCTCTTCATCCGGGGTCTTGAGTCCAGGAGTATCCACAGGGGCATCAGTGGGCATAAATAACTGCAGTTAAACCTGGTGTTTTGTGAATGAAACCTTTAAAGGTGGTTCTCAAAGATGTGCATGTCTCCCTACAAGTTCAGTGTACCTGCAGTGCCTGGTCCTTGCCTCTTATTTTAGAATACTGAGTATAATTGTACTGGATTGCCGGGGACCAGCCCCAGCTGATCCAGGGTATTCGAAGGAGAGACAGCCTAGGCGACTATTTATATGCTAATTAGAGATATAAAGAATAATAGAATGAGGATAGCTCAGTAGGAAAATTCAGTGGAGAAAAGAGGCTGAGTAGCTTGGTTTACGCGGGAGACCAATAAAACTTCAAGACAAGAAGTTTGCACCACTTACGTAGGCCGCAGGCGCCCTCTCAAATAGCGGAAGGTGCCTCACCCTAGACACCTTCTCGAGTGGGTCTTAGAAACCCAGGCATAATTAGTAAGCGTGGTGGGTTCCGCGCTCCAGATGGAGACTCAGCTGGAAGTTAAAGGGAAGAATGACATGGGGAGACCAAGCGCTGGTGAGCAAGGCCCATAGCTTTATTTTTAACAGGGGCTTTTATACCCTAAGTTACACATAGAGGATAATAGGGGATGCAAAGTCAGCAGTCTTTGATTCTTATCAAAAACCAGGGTTTCTTTCCTGCAAATTTATCGTATACAAATGGTTTAGGTGATTTACATCATCTTCTGGCCAGAAGGCCTACTAACATTTTATGACTCTTGACAAGGACTTATCAACAAAGACTTATTTTTTCTAAGAGTAATTATTTTAAGGTTTGGCGCCATCTTCCAAAGATAAAATTGCATTCCTATAGGGCGGATGTGTAATGGGTTTACAACAAAGGAAAGAATTTATTACCTTAAGGGTCTAAAGTTACTAACACCAAGGCCACTACTTATTTTTTCTACATACCCACTATTAATTAATACACATTCAAGGATACAATTCAGAGGATGTGAAAACTTGGCAACAAGCATTGACTCATCAATGAAATCCTTTACTAGTTTATTCTGACAGTTTTTAACTCTCTGAGAGGCTCTAAGCTATTTGAATACCTTAAGCTTTCCGTGCCTCTCGAGGCTGGGAGACTGTAAACAATCGTATGCATAGCTGCAGGAGTCCGGGTAAACTTGTCAGGCGAGTTAGAGAGCCATCTGAGGGGTTTGGATTTAAACACTCCTAATTGCCCAGGACCTTTATTAATTGGAGCTGTAAGTTAACTCTTTGACAGAGAGAGCGAGATGGTGGTAGGGGACAGCCCCCAGTAAAGTCAGAGGTGAGAGCACAAAGCAATAAAGTAGGCAGACTCTGGTTTTTTGGGGGGTAGATGCTCGAGAATATCCGGGGGGACTCCTGAGGCTCGATCCCGCTTTTGCATATGCCGAGCCTCCTTCCTCATGACCTTTGTCACGAGTGGAATGCCTCACCGGCTCCCGGCACTGGATGATGAATAAAACATTGTATATTGAGGATGTGTTTTTGTTTTTCCTATTTTTGGATTAAAAGCAAATGAATTTGTAGTATTTGCATTAGTACCAAATCTGCTATAGTTAGATCTGGAAAACTCCTAACCTGTCTATGCTGTATGCCTGGAGAATTCCATGGACAGAGGAGCCCAGTGAGCTACAGTCCATGGGGTTGAAAAGAGTCAGACACGACTGAGGCAGTAACTACTACTACTATTCATAGGAGTATTTATATAACCAGACAACCATTCCTTATTTATATCTATATAATCAGACATTGCTGTGGCTCAGTGGTAAAGAATCCACCTGCCAATTCGGGGGACGCAGGTTTGATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCTAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAACCCAGCAGGCTACAATCCACGAGGTCACAAAAGAGTTGGACATGACTTAGTGACTAAACAATAACAACAACAACAACAAAACTAAAGCAAAGCTTTCATTTTGGCATTGAATGAAAACTTATTACTTGCCAATGACTTATGTATAGAATTTAAGGGTATCTTTGTATTGTCTGAAAAACTGAATCTCAGTGGGATTTTACCTGGGAGCAGGTCATTTTCCATAAAGTCATAATTTTTATAGTTGTCTTTCCACTGTGAATCGTGGCCTTACCAGTAAAAAATGGCAGGAGTTGGAATTGTCACTGATGGGAGACGTTGCCTTTTGAGTCCTGTTGTTTCAGCCATTTGAGGAAAGGGTGGTGCCCTGGCCCTTGACTTCCTGGTGCTCTGTCTGTGGCCCCTTCAGAGTGGAGATCACAGTCAGGCCTCACAGCCCTGGGCTGGCTCTTCCAGTAGAGCAGGTCACACGTGTATAGAAAATGCCAACTATAGGGACAGAATGGAGACGAATGGGTGCCAGGACTGGAGGTGACTGCACAGCGACACGACACGAGGTTTTAGTGGGAAGAAATCCCCTTGTCTGTGTTTCAGTGGTGCTCACACACCGTCTATATGCATGTATACTCAGTCACTTCAGTCGTGTCTGAATCTTTGTGACCCCATGGACTGTAACCCACCAGGCTCCTCTGTCCATGGGATTCTCCAAGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCCAGGGATCTTCCCAACCCAGCGATCAAACCCTGATCTTCTGCATTGCAGGCAGATTCTTTTCAGCTGAGCCACCAGGGAAGCCCCCACATACAGTCTGTGAAAGTGAAAGTTGCTCAGTCATGTCCGACTCTTTGCGACCCCATGGACTATACAGTCCGTGGAATTCTCCAGGCCAGAATGCTGGAGTGGTAGCCTTTCTCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAAACCCAGGTCTCTCACATTGCAGGCGGATTCTTTGCCAGCTGAACCACCAGGGAAGCCCACACAGCGTCTACATTAGTTAAAACTTATCAACCTGCACACCTAAAGGGGGTGAATTTCATTGTATGCAAATGCATCTCAATTATGTAAATAATTTCCTATGTATGACATGAATTAGAATCTTTTTTCCTTTGGTGCCTGAACAG
Seq C2 exon
ATGATTCACAAGCTGGCAGCTCGAGCTCTGATAAGAGATTATGAAGATGGCATTCTCCACGAAAACGAAGTGAATCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400:ENSBTAT00000035651:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development