BtaINT0108973 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007758 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr9:102048677-102050657:-
Coord C1 exon
chr9:102050599-102050657
Coord A exon
chr9:102048729-102050598
Coord C2 exon
chr9:102048677-102048728
Length
1870 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTACCTTTCTTTTTTTTCAGAAC
3' ss Score
12.62
Exon sequences
Seq C1 exon
GTTTGCAGAGGTCTTGCCAAACAGACTGAACTGAATGACTTTCTACTCGACGTATCAAA
Seq A exon
GTAAGTGTTCATCTCTAGGGATGTGGTAAGCTCTAACAGGTCAACGGTTTAGATCAGGCGCCGGCCCTGACCGTGACAGACTGCTGTCCACTGCGGTCAATAGCAGCAGATCAGTCCTTACCCGGCACGTGATCTGGTAAGTGTGGGCCATCATGTTTGTGCTTAGAGAGTTTCATTCTCAGCCACATTCACGTCACAAGTAAAGGATCAAAGACGAATATGTGACCAGCTTAATTTGCAATTGGGCATGTTTGTAAATGACTCACTAGAAGGTGTTAGAGACTATGCAGAGAGATGCCGTAGTGTTGCTGTTTGCATAGGAGAGAACTGACAGCAGTGGAAGGAGGGGAAACGTTGATCATTTTCCCGAAGTCCTCTTTGGCCCTTGCTGTGAACGTCAGTAAATCACAACATACTGTTGACATTATTGTTTCAGTTTTCCCATTCTGAAAAAGATGGTGCCCTTCCCCGGAGTTTAACCTGGGAAGACTCTTGGGCTGGCAGTGGAGGAAGTACAGATGTTCGTTAAGCGTCAGGCCCACATCAGGTTTGCTTGCTATGGGGACGGCCATGTATTGATCTCTCTCTGACCGTCTGCTCAGTGGTTGAGATCTGAAAACGCCCCGGGATGTGCTAGCTTCAGGGCCCCACCCCACGGCAGGTTACTAACTCAAGGAGCACTCCGCAGCAGCTCTGATGCTGTTCCCGCTGACATGTCCCTGGCTTACTCGTCACCAAGTCCCGTAACCCCCTCACTTGTGATTCTGAAACTGCATTTTCGTGTTTTGAAATATTAGGGAAGTTTGAGTTGGAGGGCGTGCTCTTTTGATCTCCTTGGCCAACTATCCATATCTTCTCTGAGACAGAATGAAACAGCATGTCTGGACAGCAGATGTGACTGCTTCAGAGCCACCCCGGAAGGGAAGCCGTGTTCGGCCTCTTGCTAGCCTGTCTGAACACTTTGCAAGCCTCCCAAAGCCCAGTTAAAACCCTCATGTGACACCTGAAATCTCTTCCCCAGTGGGAAACTGATTTTCTTCAACCTGTTCCTTGCAGGATATTCCTCAGTGGATGTTGTAACTAAGCATATTAACAGCTTCAAGTCAGATGATTTCTCTTCTTGAAAAGGGCATTGTTAATTGCTATAAGTTACCTTAATCCTGAATACAGGGCTAAATTCTCACAGACCTAAACTGAGAGCGGCACCTTGCCAACAGTCTGTGTTAAGAGTATTTGCCACATATTCCCTATAACACGTGCCTGCGGATTTATCTGTTTCTCCGGTCTACATTTTAATGTATGTGCCATATGCCCTACAAATACTTACTTGCAGTTCATAATGATGAATCTGTATTTACTTGTGTAGAGTTGTCAGCTCCTATCATTACCTGTATTCTGATATTTCTTCTCAAATGAATTTCCCTGCTTTTTAAAAAAAAATACAGTTAAACTACATTCTAGCTTTTGGGGTTTTCAGTGATTTTTTTGTATTTTTATCTTATTAATGAGATTTAGCAAATTTAAATATTTTTGTTTTATATCAAAGTTATTAATGAGATGTTAAATTTGATGTACCAGTTTTATTTCTTCATCGTTTTAGTTAAATGCTACAAACTTTTTCTCTACCTTGAATAATTACTGAAGGCGATCTCTGGAATTAGAGCCCTTATACTAAAGTCAGTGATAAACTTTCATTTACCTCTTTAAAATAATATTATTGGTGGTTTCCACGAAAGGACAACAGTCAAACAGCATATATCTTTCTGTTTTTTTATTTAAATGTAGCCAAAATTGGGAAATGTATTCAAAGTTTCATATGTTCTGTGTTCTAATAACATTACTTAAAGATTTTACCTTTCTTTTTTTTCAG
Seq C2 exon
AACCTATTTTGATAACATAGTTGCAATAGATTCTCTACTTGAACACATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007758:ENSBTAT00000010204:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0159021=GAF=PU(6.1=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]