BtaINT0109222 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63224217-63227322:-
Coord C1 exon
chr7:63227275-63227322
Coord A exon
chr7:63224367-63227274
Coord C2 exon
chr7:63224217-63224366
Length
2908 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCTGGCTCTTCTCTTGCAGAAA
3' ss Score
11.12
Exon sequences
Seq C1 exon
ATTTGCAACATCATGAATGCGCCTTCAGAGGACTTTTTTGCATTCCAG
Seq A exon
GTAAGTCATTTTTCATTTGCTATCTTAGTTACTTGGTATTTTTCCCCGCAAGGAGGATTAGAATACATTAAAATCTATCTACGTTATTGGGAAGCAATCTCAATAAAGTGAAAATGTGAGTACAAAAAAGTCATGTGCCAATGGAAGTGGGGAGAGAATTAATTTGGTAAATGCCAAGGTTCCATTTGATTTTAAGGTTTATAGCCTTTGCTTTCTGGCCTCAGGACCTTTGCTTATGCAGTTCTCTCTCTCACTACCATCTCTTGCCCAGATGCCCTCTCCCCTTCAATGACAGACTCAATGCTATGAAATTTTTATGAAGTTTTATTCTACTTCCCCTGGCTGAGTATCATTTCTGTCTCCTTAAGATGATCACAGAATCTTGTTTAGTATTCCATTTGATGTTGTCTGTGTGTCTTTTAAAAAAAACGTTGTGGAGGACACGGTCTGGGCCAGCCATTGGCACAATGCTACGCTGGCTACAGAGGTGGACCAGACAGGCATGGTCTGTGTTTGCCAGGAGCTCATGATCTCATGGGGAGAGAGACAGGTGGAGTGCTGGCCAGGACAACGGTAGAGGAGGGAATCTCAGGGGGGCCTGAGTTCATCCAGAAGGAATCAAGGACTGTGTCCTTGAGAAATTACATTTGAGCAGTAAAAAATGGAGAGAGGATTGCAGGAAAGAGAAGGCTTGTGGAAGGGAGAGTAGACCAATGAGCCTGAGGGGAGAGTGGCAGGAGGAAATTCTAGAGAGGGAGACAGAGGCCAGGTCACACAGGGCCTGGAAGTCCATGCCAAGGAGTTTGTCTTTCTCACTCCATTTCCCTTCCCTCGTATTTTATGCTCCTTCCTTGCCTTTTAGACTAATTCTTCTTGGCAAAATATTGGCTTCCTTAGGTCAAAGGTTGTGGCTTATCTTTCTTAACTTCTTCAGTTGCAGGTGCCCTGTCAATATTTTGGGTTTAGCATTCTAAATATACAGAAAACAAATCATGAGTGGTCAGAAAATAATGAAGAAGGAAATAAAAATGACTCATATAAATATTAGTGGCTTATGTGTTTACTCCTTAAAGAACATTATGAAAGACCTTAGAGAGAATATCCTTCCAAGGTTAAAACTGTATGCTTTGTGTTGTGATGTTGATCATATCAGTATGACAAGGCAGGTTGTTGCTGAGAGTTGCTACCATGATTATAACCAAAAGAGAGCTTGGTCTTTACCCAAGTCATCTGATTACAGCTTACTCATATTCATAAGTCAAATCTGATCTTGTTTTTAGATCATAGTCTTCTATCTCCACAAAGTAGCTCAAGTGATGTTTTTAAAAAAACTTCTCTACCCTTCTCCTGGCCAGCACTCCACATGTCTCTCTCCTCATGAGATCATGAGCTCCTGGCAAACATAGACCATGCTCGTCCAAATAACTTCTCTCCTTAAAAATCTTTAATGCTTTTTAAACTCAAAACTTCCAGGCCCTGTGTGACCTGGCCTCTGTCTCCCTCTCTAGAATTTCCTCCTGCCACTCTCCCCTCAGGCTCATTGGTCTACTCTGCCTTCCACAAGCCTTCTCTTTCCTGCAATCCTCTCTCCATTTTTTACTGCTCAAATGTAATTTCTCAAGGACACATTCCTTGATTCCTTCTGGATGAACTCAGGCCCCCCTGAGATTCCCTTCTCTACCCTTCTCCTGGCCAGCACTCCACATGTCTCTCTCCCCATGAGATCATGAGCTCCTGGCAAACACAGACCATGCCTGTCCAAATAACTTCTCTCCTTAAAAATCTTTAATGCTTTCCCATTTCACTCTTGATAAAATCTGCCTCCTTATCAGGGCCTTCTGAGGGAAGGGACTCCCCCAAGGTGAGGAAGAGAGTGGGGAGGAAGGCAGGCCTTAAACTCAAGTTTCCTGACTGACAGCCCTGCGCCCTTTGGACTATGTTCTTCATCCCTATGGGGTCACTCTCCTACCAGGTGATACCAGTGTCACAGAAATAATAATAACCATCATCTTGCCACCTTCAAAACCTTGGAACCTCTGAGCTGGAAGACTCTCCAACTCCAGGAAAGCTTTCTTGACTTCCTTCCCTTCCCTGGTTCCCACAGACCCTGAGAGAATTTCCTGCATGCCATCTGATGGTCTCCTTACCTTCCAGATGATGGGCAACTTGAGAACAACACCTGTGCCTTACTTGCCTTGGTTTCCTCAGATTCTAGCTCTTGCACGTTGTAAAACATTTGATAAATCTGTAATGAATCAGTGGGAAAAGAGCCTAGAAAGTATCTAGTCTAGTTATTCCCATTTTTATAGATGATGGAAGTGAGGATCAAATAGGAAATGACTCATAAAGAGCACCTTCTAATTGACCAAGAAATCTCACCTCTATTTTCTCATTTGTCCCATGAGGCATAGACTCTTACGACTGTCCCCGTATAGATGAGAAAATTGAGGCCCATGGAGATAAAATGACATGCCAAAAGGAACACAGACAGGCAGATAGGCAGTCAAAAGGTGCAGGTTAAATCTACTTGATGAGTTCAAAGTTACAAGTATCACCAGGGCCCCTGCCAAGCCAGTCCTCCACAGTCAGCTCCTGTGTCTGAAAGGGAAATACCGCCTCCCTGTACTGTCTGTGGGCATCCTTAGAGCCAGCAACACACAACTCACTGCCTGGCACATAACGGCCCTGATATCTTAGGAATGAAAATGGTATTGCTATTTGGCTTATGGAGCTCCCACCAGATGGGCAAAACTGTTCATGGCGTTTGGTGACTAAAACCAGGCGTAACCCAGCAAGGTCTAACCTGCCAACCCCTCGGCCAAGCAGGGTCACAACACAGCATGAAATCCATCATGGATGTCTCTGTAGCCTGGTACCCGGGCAACTTATTCTGGCTCTTCTCTTGCAG
Seq C2 exon
AAAGAGCCTCTGGATGAGTCTGGATGGGTGATTAAAAATGTCCTTTCTATGCCAATTGTGAACAAGAAGGAGGAAATTGTTGGGGTGGCCACGTTTTACAATCGCAAAGATGGAAAACCCTTTGATGAAATGGATGAGACCCTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945:ENSBTAT00000036662:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(8.4=100)
A:
NA
C2:
PF0159021=GAF=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]