BtaINT0109258 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000445 | PDE6C
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr26:15006750-15009228:+
Coord C1 exon
chr26:15006750-15006903
Coord A exon
chr26:15006904-15008904
Coord C2 exon
chr26:15008905-15009228
Length
2001 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GCTTTTCTCCTTTTTCCTAGCTG
3' ss Score
8.03
Exon sequences
Seq C1 exon
GAGTTTTCACGGTTTCACAAAGAAATCACACCTATGCTGAATGGTCTTCAAAACAACAGAGTGGAATGGAAATCCCTAGCTGATGAGTATGATGAAAAGATGAAGGTAATTGAAGAGATGAAAAAGCAGGAAGAAGGAAATACGACAGAAAAAG
Seq A exon
GTTAGATGGAATCTGTTTTGGCTTCTTGTAAAGTAGCTGGAAGTTCAGCAGAGCTTCATCTCACATGACAAAAGCATAAAAAGTAAATGCAAACAGAAAATTTGCTTTACTGCCCACAGACTGAGAATTATAAGAAGCTGATTAGTGGTTTTCAGGGTTTTTATCCTCTTGAACAAGATCTTACTTTGTAATTCAAGATGGAATTGCTTGGTCCAGTTGAAGTTGGGGTTAGGGCTAGGTTTCTTCATCCACTCAGTAAAGTGGCTCCTGAGGTACCTCTGCAGAATACTGAATTTTAAGAAATAATATGAAAACCATAGGATTAATGGGATCAATCAGGTTTAGGTGAGAAAATAATTTTAGCCCTAACATTCTGTATTAGCTGTAAGACTTTGGGCATCTTGCTTAACCTCTCTGAGCTTAAAGTTCCTCTTCTTATAATGAGAAAACTTTACAGATCTCCAGCCTCATTTCCAGATCTAAGGAAGCCCTAGATGTAAAGATGGCCAGCAGAGTGGGGTGACTTGAAGGTACCCTAAGACTTTGTCTGTGCCTCAGATGTTTCTCCTTAGTGCTGTTTATCCTGATGAAATTTCTACTCCTGAAGTCACTCAGTTAAGTTTAACATAATCTTCAGAAAGCCTCTGTTAAGATGCTTATGATCACCTATTAGTTCATCAGATGACTCAAATGACATCTAGAAAGCGGAATACTAATGTCATCGTTTCGTATTTTGTCTCAAGAGCTCAAGACTTAAAAGGTTTTGTAAGAAATTCTTATTGTTTAATAAAGAAACCATCTCTGTCTGGAAAAGCCTTGTTAAAAAAAAATGCAACATTCTTTTTAGACGGTTCATGTGTTTAGTGATATTTTAAAGAATTCAGAGGGAGAAAGCATTTTGCTTAAAGGGTTAAGGATATCATTCAACAGAATAAAAACAGGAGTTCCTGACTCTAGGATATACATTCACTTAAATGTTTAGTGGCTGTGTATTCTGTACAAGGCCCTGTGTTAGGCCCTGGGGAAAGATGGGGTCCTTATCTCCAGAGCTTACCACCTGGTACGGGAGTGCCAAGTGAAAAATCGATTATTTAACTATAATTATCAGAAGAAGCATACCTGGGGCATCAGGGAAGTCGTTCCTGAAGGATGTTTATGCTACACTGAAGACAGGCTTCTTCTAAGCAAAGAAAGGAGGAAGAGTTTTAAAGGAAAGGAGAGGAAAGAATAGAATATGCACAAAGGCCGTGACGTGGAAATAAGCTTGGTGCGCTGAAGAACTTGAAAACTGGTGTAGCTGGAGTCTAGAGAGCAAAGAGAGCAAAATACCAGATGAAGCCAGGAATGCAGGCAGCTCTGCCAGATGGGTGTGTTACCCTGAAGGCCTCCTTATGGATCTGTCCTCTACAGAGCAACGGGAAGTCCTTAGAGGGATGGATTTCAACATGAAAGGAGTAAGATCTGAGCTGTGCTTCAAAAAGATAACAAAAATGGTTATTTTTACTGAGCAAGTGAAAAGCAAAAAGTTATTTCTTAGTGCAGTTAATCTTTATCCCAATTTTACAATGAACACTATATCAAGCCCTTTAAGTGGTTCGTGACTTTTTTTTAAATTTAGTATTTGGTATATTGGATATGGATCTCTATACTTTATTTGCATAAAATTACTTCTGAATTTTCTTCCTACTACACTGAGAAGTCTCTGTAAACTAAGAATATTATTTTATCTCCAGGCAACACAAAGCAACAACTCAGATTCCCAGACTGGATAGTTCAGTGGTTCTTTTGAGAACTGAGACATTAACTGGTTAGTCATTTATTAGATTTTATTTTCTAAATGGACTAATTTTGAATATGAATTCAAGTTTTTAAATGGTCAAACTCTTAGTACTTGATATAGGTTAAAACTATGAATTAGGCTATATAGTTACTCTAATACTAGGAAAAAACTACTATATATCCACTGATTCCTGAAAATATTGCTTTTCTCCTTTTTCCTAG
Seq C2 exon
CTGTAGAAGATTCAGGAGGTGGTGGTGATGACAAGAAATCCAAAACATGTCTAATGTTGTAAGACAATCCAACCGGTCTAAATTACAAATATTGTTTCTACATTTGAAGAAAACATTAAAAAAGAACATCAGCAAATTTCATTCATCAAACCATCAAGTAACAGAGACTCTTCAGGAAGGCTACCCTGTGACTAGCATAAGAAAATATACTGCTAGCCTGAAAGCCATGAGGATAAAATAAAGTTCAACAAAAGTGCAAAATAAGACAAAAATAAGTGCATTTTTGGTGCCAATTTGTTTTAAATTAAAAATAATATAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000445:ENSBTAT00000000569:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PD(7.6=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]