BtaINT0109514 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016836 | PDK1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:HGNC Symbol;Acc:HGNC:8809]
Coordinates
chr2:24097325-24102030:-
Coord C1 exon
chr2:24101959-24102030
Coord A exon
chr2:24097510-24101958
Coord C2 exon
chr2:24097325-24097509
Length
4449 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TGACAGACAGGTTTGTTTAGCTT
3' ss Score
-4.56
Exon sequences
Seq C1 exon
GTATATCCAGAGTCTTCAAGAGCTTCTTGAGTTTAAGGACAAAAGTGCTGAAGATGCTAAAACTATTTATGA
Seq A exon
GTAAGTACAGTTGTTTTGCCTTATTTGAACATCATATAAAACATCGTCATATACTCTTTGAACATCATATAAAAATGTAAATGTATTGCTATTGGATCATTTTAGGGAAATTGATTAACTTTTGGTTTTTCACTGCTTTAGAACATATGATGGTATATGTTTCTTGTCACAGTCCATACAGGCCAGCCAGGTAACATAAATTCAGAAATTGGACTGGGCATAAGAAGAACTTCATGTTTCTCTTCACTCTAGTGTAAAGAAAGATGCAGTTCAAATCTGGTGATCTGATGTTGATGTGGTCTCAGGGCCACTTGGATGGTAGGAGACTGGTAAAGACTTGGTAATGAGCACTTGCTTCTAAAGGACAGCCTTTCAGCTCTACTGACCATTGCCGAGCAGAAACACTGCCCAGATCATATGATATGTGTGTGTGTTGGGGGGCGGGTATAAGAAAAGCTGCAAGTCTAGTTATTTTTGTTTTTTAAGTTAGATTTCCTAATTTTGAAAGATTGGAAACTAAACCTTCAACAAACACTGAAGGCCTGCAAGACAGAAACTTGTCTCTAGTTTATGAACTGTGGTCTGCGAGACAATGTAAGTAATGTGACCTATTAATAATCAACATACCAGGACTAATAAACCTCGTAATCCCCTAAGGCAAGTTACCTGCTTATTCCAGTGAATGTTACTCAGAACTTAAAGACTGTTTCTGTTGTTGTCCTCCAAGTCCATTACACATTTTTTTTTTACTGTCTTTAAAGGTGGTAGCAACATTTCACTTTTTAAACATGATTTTGGTTTGAAAATAACACCAAGAATTTGCGTAGGTATGCAGCAAAATTTACACAGATGATGTCACTTACTCTTTAAAATGACTCTACTGAAATAATACTATCTGTGCAAAAAGAGATGCTATCTGTGGACAAAAAGTCTTAAAATAGCATTAGGCTCACATGGACAGCAAATGGATTTAGACCCATCCAGTCTAACTTAAAAGTAAACCTTATGCTGAAAAACCTTCGGAAAATAGTCATTCAGACCTGAATTTTAAAAAAATATCGTGAGCAGCCAGGCAAAATAATACTACTTTGGTTTTGACAAAAAAAGAGAGATGTGAAATAAATGATTAAGAAGTAAATAGAAATGATGAATTGTTTTCAAGGAGTTTGTTGTTTGTATTTTGGATTAACAGTTTGGTTTTGAAACTAATCATAAACTAGGAATTCCAAAAATATTTTGAGCAATGAGAGCATCATTGGAATAGGTTAATAGTAGTCAAGATGATGTCTCTGAAGACTTTGAATGAGGAAGCAGTCATTTGGAAGTGTGAGTTCTGATGGCTGTATTACAAGGTAGATTTTGTTACTTCACAACTAAGACTTCTTTCCTCTTTTATTTACTTCTTTAAATTAGCCATGCAGTTCAGTGCACTTTAGTCACTGGGTTGTGTCCGACTCTTTGTGACTCCATGGACTGCAGCACACCAGGCTTCTCTGTTTATCACCAACTCCCAGAGCTTGCTCAAACTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTTATCCTCTGTCATCCCCTTCTCTTCCTGTCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAGTGAGTTATTTCTTTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTTAGCATCAGTCCTTCCAAAGAATAGTCAGGACTGATTTCCTTTAGGATGGACTGGCCAGATATCCTTGCAGTCCAAGGGACTCTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAGTTCTTCAGCGCTCAGCTTTCTTTATGGTCCAGGTCTCACATCCATACATGACTACTGGAAAAACCATAGTTTTGACTAGATGGATGTCTGTTGGCAAAGCCATGCAGTAGTGTCTTCAAATGACAGAAATAGAAAAGCTGGATGGCTTGAAGATTTTTCTATGAACACACATTCACCTTTTTTTCTCCCATTTTTTTAAACTCATAGAATGGAATTAGAATTCCTTTCTACTTTTCTTAGTGGCCCTTTCTCTCTTGAACCTGGGAAATGGTTCCAAAACACACAGCCTTTATTGGCTCATTCATCTTCATTCCTTACAGAGCATGTGTTCTCTAGAAGCAAGTGCTCTGTCTTCTCTTATGCTGGCTGTGCCTGGATCCCATCCTCATAGCAGGTGTTGAAATAATCTTAGTTGATGATAGTTAAAGAAAACCCTTCACATTTGTAGGATTGTGTTTTGTGGCAGCCTTACTTTTAGGAGTTCCAAGAAAATAATTACATTTTACAAGTTTTTTTTTTTGTTTTGGAGTTTCTTAACATCCCCATGGAAAAGAAATGCAAAAAAGCAAAATGACTGTCTGAGGAGGCCTTACAAATAGCTGTGAAAAGAAGAGAAGCGAAAAGCAAAGGAGAAAAAGAAAGATATAAGCATCGGAATGCACAGTTCCAAAAAATAGCAAGGAGAGATAAGAAAGCCTTCCTCAGAGATCAATGCAAAGAAATAGAGGAAAACAACAGAATGGGAAAGACTAGAGATCTTTTCAAGAAAATTAGAGATACTGAGGGAACATTTCATGCAAAGATGGGCTCGATAAAAGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTGTACAAGAAAGATCTTCATGACCCAGATAATCACGATGATGTGATCACTGACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATCACTACGAACAAAGCTAGTGGAGGTGATGGAATTCCAGTTGAGCTATTCCAAATCCTGAAAGATGATGCTATGAAAGTGCATACTCAATATGCCAGCAAATTTGGAAAACTCAGCAGTGACCACAGGACTGGGAAAGGTCAGTTTTCATTTCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCACACAATTGCACTCATCTCACATGCTAGTAAAGTAATGCTCAAAATTCTCCAGGCCAGGCTTCAGCAATATGTGAACCGTGAACTTCCAGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAATATCTGCTGGATCATAGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTATGGAAAATTCTGAAAGAAATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTATATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTTTGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTCTATGCAGAGTACATCATGAGAAACGCTGGACTGGAGGAAGCACAAGCTGGAATCAAGATTGCCTGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAATGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTTTGGGCTCCAAAATCACTGTAGATGGTGACTGCAGCCATGAAATGAAAAGACGCTTACTCCTTGGAAGGAAAGTTACAACCAACCTAGATAGCATATTCAAAAGCAGAGATATTACTTTGCCAACAAAGGTCTGTCTGGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGTGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTCAAGGAGATCAGTCCCGGGTGTTCATTGGAAGGACTGATGCTGAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGATTCATTGGAAAAGACCCTGATGCTGGGAGGGACTGGGGGCAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCGACTCGATAGACATGAATATTCGTGAGCTCTGGGAGGTGGTGATGGACAGGGAGGCCTGGCGTGCTGTAATTCATGGGGTCACAAAGAGTCGGACACGACTGAGCAACTGAACTGAACTAACATCTCTATAGAGATGGTATATTTTATTATCTGAAATATACTTAAATAAGTGTAAGAAAACATGCCTTGATGCTTCTTTTACTGAATTAGGCATTTCTTGTCTAGTATAATTGGCTAAATTTAGATTTTAGTATCACATTCACTTGCCAAAATATTTGGCTGTTTTGACAGACAGGTTTGTTTAG
Seq C2 exon
CTTTACAGACACTGTGATACGGATCAGGAACCGACACAATGACGTGATACCCACAATGGCTGAAGGTGTGGTTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAGAATGTTCAGTATTTTTTGGATCGTTTCTACATGAGTCGAATTTCAATTAGAATGTTACTTAATCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016836:ENSBTAT00000038518:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.4=100)
A:
NA
C2:
PF104364=BCDHK_Adom3=FE(37.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]