BtaINT0111155 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038831 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr11:99441598-99449139:+
Coord C1 exon
chr11:99441598-99441700
Coord A exon
chr11:99441701-99448980
Coord C2 exon
chr11:99448981-99449139
Length
7280 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCCTGCCTGTCTGCCTGCAGTTT
3' ss Score
10.16
Exon sequences
Seq C1 exon
AACTTCCTCTCCAGCCTTGGCCTTGGTACCCAGAGCTACCAGCCGCCCTTGTGCCCTGCCCCGGGTCATCATGGCCTGCCTGATTCCCTCACAGCTTCAGAAG
Seq A exon
GTAGGGGCCTGCCGGTTGGGAGACCCCGAGGGTCAGATAAATATAAGGGGCCCCTCAAAACTTGAGCTAGTCCAGGAAACTCGACCCCGCCCCGTTGTATTTCTGAACAGGAAACTGAAGCCCAGAGTGGTCGGTTCACAGGCACGACCCCTAACTTCTGCACACACAGCCAGGGGCCGTCCAGGCCACCGCACCCGCGGTGGTGGGGGAACATGTAGGTGACAATACCAGACTAAAACACAGGGTCTTGAGAGCTGGGGGTGGGGGCGGGGGCGAAGGTCTGGGAAGGGGCGGGCCCAACGAGGGGGCGGGCCCGCTGATCCCACCCCTAACCCAAGGCGCTTGGCTGCGGAACCAGCCGCGGGCGTTCCAGCGTGCCTGTATGCTAAGTCACTTCAGTCTTGTCCCACTCTTTGCCACCCTACGGACTGTCTCCCGCCAGGTTCCTCTGTCCACGGGATTCTCCAGGCAAAACTACTGGAGCGGGTTGACATGCCCTCCTCCAGAGGAGGACCAGGGATCCGACCTGCGTTTCTTAAGTCTCCTGCATTGCCAGGCGGGTTCTTCACCGCTAGCGCCACCTGGAAAGAGCTAAGCCTTGGGAATTAGAGCGAGGGAGATCTTTGAAAAAACCTGACCCTTGTGGTTTGATCCTGGTGGCAAGAGGAAAATGCAAAAAAAAAAAAAAAAAAAAAATTACAGAAAATCTCAAAAAAGAAAATTAAAACATTCCATACATTTCCTTGAAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGAAGAATCCCATGGACAGAGGAGCCTGGTGAGCCGCACAGTCCATAGGGTCGCAAAGAGTCGGACACGACTGAAGCGACTGAGCACGCACGCACGGGCACGCACGCATACATTCCCTACGCTGAGACAATATTTTTGTATACAGCCCTTGAATCGCTGAAAGGTCCGGGGAATTCCCGGGTGGTCCCGCCGTTAAGACTTGACCTTTCCACTGCGGAGGGCACAGGTTTGATGCCAGGACTTGGAATTAAGATCCCGGAAGCCGCACTGTGGGGCCGAATAAAATAAAAGGCCCATCACAGTTGTTGTGTCTGACTAGGTTGTGTCCGACTCTTTGTGATCCCATGGACTGCAGCACACCAGGCTTCCCTGTTCTTCACTATATCTTGGAGTTTGCTCAAACTTAGGTCCATTGAGTTGGTGATGCCATCCAACCATCTCATCCTCTGTCATTCCCTTCTCCTCCTGCCTTCGATCTTTCCCAGCATCAGGGTCTTTTCTAATGAGTCAGCTGTTTGTATTAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCGATGAACATTCAGGGTTGGCTTCCTTTAGGATTGTTTGATCTCCTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACAGTTCGAAACCATCAGTTCTTGGGTGTTCAGCCTTCTTTATGGTCCAACTCTTACATCCAAACGTGACTACTGGAAAAACCATAGATTTGACTAGATGGACCTTTGTCCGCAAAGTGATGTCTCTGCTTTTTAACATACTGTCTAGGTTTGTCATTGCTTTTCTTCCAAGGAGCAATCATCTTTTAATTTCATGGTTGCAGTCACCATCCACAGTGATTTTGGAGCCCAAGAAAATAAAATATGTCATGGTTTCCACTTTTTCCCCTTCTATTTGCAAAGAAGTCATAGGACTGACTGGATGCCATTGATCTTAGTTTTTTGAATGTTGAGGGTTAAGGAGAAGGGGATGACAGAAGAGGAGACAGTTACATGGCATCACTGACTCAATGGACATGAATCTGAGCAAGCTCCAGGAGATGGTGAAGGACAGGGAAGCTTGGTGTGCTGCAGTCCATGGGATCACAAAGAGTCTGACACGACTGAGGAACTGAATAGCAAATCTTGATTCCAGCTTGTGATTCATCCAGCTTGGCATTTCACATGATGAAGCAACAGTTAGAACTGGACATGGAACAGCAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATTGTCACCTTGTTTATTTAACTTATATGCAGAGAACATCACGAGAAACGCCAGGCTGGACGAAGCACAAGCTGGAATCAAAATTGCTAGCAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTAAAGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAATGAAGATCATGGCATCCGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAGTGGAAACAGTGGCTGACTTTATTTTTCTAGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGTTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTTCATCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAACAAAGCTGAGCACCAAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGTGAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCGTTGGAAGAACTGATGTTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGAGAAGAGCTGACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGAGGGCAGGAGGAGAAGGCGACGACAGAGGATGAGATGGCTGGATGGCATCACCGACTCAATGGACATGGGTTTGGGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGCCGTTCATGGGGTTGCAAAGAGTTGGATACGACTGAGTGACTAACACCCCAAAAAGATGTCCTTTTCATTATAGGGGACTGGAATGCAAAAGTAGGAAGTCAAGAAACACCTGGAGTAACAGGCAAATTTGGCCTTGGAATACAGAATGAAACAGGGCAAAGACTAATAGAGTTTTGCCAAGAAAATGCACTGGTCATAACAAACACCCTCTTCCAACAACACAAGAGAGGACTCTATACATGGACATCACCAGATGGTCAACACCGAAATCAGATTGATTATATTCTTTGCAGCCAAAGACGGAGAAGCTCTATACAGTCAGCAAAAACAAGACTGGGAGCTGACTGTGGCTCAGACCATGAACTTCTTATTGCCAAATTCAGACTTAAATTGAAGAAAGTAGGGAAAACCACTAGACCATTCAGGTATGACCTAAATCAAATCCCTTATGATTATACAGTGGAAGTGAGAAATAGATTTAAGGGCCTAGATCTGATAGATAGAGTGCCTGATGAACTATGGACTGAGGTTCATGACATTGTACAGGAGACAGGGATCAAGACCATCCCCATGGAAAAGAAATGCAAAATGGCTGTCTGGGGAGGCCTTACAAATAGCTGTGAAAAGAAGAGAAGTGAAAAGCAAAGGAGAAAAGGAAAGATATAAACATCTGAATGCAGAGTTCCAAAGAATAGCAAGAAGAGATAAGAAAGCCTTCCTCAGCGATCAATGCAAAGAAATAGAGGAAAACAACAGAATGGGAAAGACTAGAGATCTCGTCAAGAAAATCAGAGATACCAAGGGAACATTTCATGCAAAGATGGGCTTTATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAAATGGCAAGAATACACAGAAGAACTGTACAAAAAAGATCTTCACGACCCAGCTAATCACAATGGTGTGATCACTGACCTAGAGCCAGACATCCTGGAATGTGAAGTGAAGTGGGCCTTAGCAAGCATCACTACGAACAAAGCTAGTGGAGGTGATAGAATTCCAGTTGAGCTATTTCAAATCCTGAAAGATGATGCTGTGAAAGTGCTGCACTCAATATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTTAAACTACCGCACAATTGCACTCATCTCACATGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGAACCATGAACCTCCTGATCTTTAAGCTGGTTTTAGAAAAGACAGAGGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAGACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAATCTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCGGAGTACATCATGAGAAATGCTGGGCTGGAAGAAACACAAGCTGGAATCAAGATTGCCGGGAGGAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAAGAACTCAAAAGCCTCTTGATGAAGGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAATGAAGATCATGGCATCCGGTCCCATCGCTTCATGGCAAATAGATGGGGAAACAGTGGAAACAGTATCAGACTTTATTTTTCTAGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAACGTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTTCATCTAGTCAAGGCTATGGTTTTTCCTGTGCTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAATGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGATAGGACTTTGGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGACTGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCAAAGAGTTGACTCATTGGAAAAGACTCCGATGCTGGGAGGGATTGGGGGCAAGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTGAGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCTGCAATTCATGAGGTCGAGAAGAGTCGGACACGACTGAGCAACTGATCTGATCTGATCTGAGTGACTGAACTGAACTGAACTGATTCTTTATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTGCTCCTTTCCCAATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACCGTTGCTTCTTGACCTGCATACAGATTTCTCAGGAGGCAGGTAAGGTGGTCTGGTATCCCCATCTCTTTAAGAGTTTTCCACAGTTTGTTGTGATCAACACAGTCAAAGGCTTTAGTGTGGTCGACAAAGCAGAAGTAGATGTTTTTCTGGAATTCCTTTGCTTTTTCTATGATCCAACAGATGTTGGCCATTTGATTTCTGGTTCCTCTGCCTTTTCTAAATCCAGTTTATACATCTGGAAGTTCTCGGTTCACAGACTATTGAAGTCTAGCTTGAAGAATTCTGAGCATTACCTTTCTAGCATGTGAAATGAGCACAACTGTATGGTAGTTTGAATATTCCTAGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTTCAGTCCTGTGGCTATTGCTGAGTTTTCCAAATTTGCTGGCATTTTGAGTGCAGCACTTTCACAGCATCATCTTTTAGAATTTGAAGTAGCTCATCTGAAATTCTGTCACCTCCACTAGCTTTGTTCATGTAATGCTTGCTGAGGCCCACTCGACTTTGCATTCCAGAATGTCTGGCTCTAGGTACATGACCACAGCATCGTGATTATCTGGGCCATTAAGAACTTTTTTGTATAGTTCTTCCGTGTATTCTTACAGATGGTAGAAATGCCCATTCAACATGTTTCCCCAAGTTTCTCCTATGTGCCAGGCACAGTACTGGGACCTAGAACTCCTGCTGTCCCTTGGGCCTTCACGCAGCCCTCTGTGGAGGGACAGGTGTGACCCCACTGGACAGCATTTGCCCAAGTTCTCGCAAATTAGAATACTTATTTGTATTTGGCTTTTTTTGTTGTTCTTGTTCAGTCACTTAGTCATGTCCAACTCTTTGCAGCCTCATGGATCACAGCATACCATGCTGGCCTGTTCTTCACTCTCTCCCGGAGTTTGCTCAAACTCAAGTCTGTTGAGTCTGTGATGCCATCCAACCACCTCATCCTCTGTCACCCACTTCTCCTCCTGCCCTCAGTCTTTCCCAGCATCAAGGTCTTTTCCAATGAGCCGGCTCTTCAGTACATTTATTTATTTAGCTGGGCTGGGTTTTAGTCGAAGCACTTGGGATCTTTTATCTTCCTTTCGGCATATGGGATGGTTAGTTGTAGCATGTGAACACTTAGTTCTGGCATGTGGGATCTAATTCCCCAGGCACTGGGAGCAGCGGGGAATCTTAGCTACTGAACCACCAGGGAACTCCCATGGCTTCTTTTTCTAATCTCACAATATATCTAGAACACATCCCCATGCCAGTAAATATTTTTCTATCACCTGTGTTACACTCCAGGGAGATAAAGCATACTTCGTGTAATAGAATCCCGTGTATACTGGTCTGTTGGATGTCTGTCTCCTTTCTTAGACCAGGTCTGGGAGGCAGGCATCATGGATGGCTTGTTCACGACTGAATCTCTAGCTCCTAAAGCCACATCTGGTGCACGGTAGATGTACAGTCAATGTTGGCTGGATAAATGAATGAGGTTGTATCCCCATGTGACTCAAGCCCACTGGAGGGTTACAGTGGGGACATCTCTGCTTCTACTCCCCTTCATTCAAGCAGCCAGCACTCACTGCCCTTCACTGGACATAGGCACCATGGCCAGGGAGGCGGGCGGAGCAACGAACAGGACGCTAGGTCCTGCCTTCAGACAGCTTCTGGTTTGGGGAGGGGTCAAATCAGTCCTCTCAAAGAGCGTTTGAGGCTGGGGGGAAGCCTGAGTCTCCTGCCTGTCTGCCTGCAG
Seq C2 exon
TTTCAGGAGGATGGATTCCTGGTGCTGGAAGGGTTCTTATCTGCAGACGAGTGTGAGGCCATGCAACGGAGGATTGATGAGATCGTGGCCAAGATGGATGTCCCTCTCCACTGTCGCACGGAATTTTCTACCCAGGAGGAGGAGCAGCTGCGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038831:ENSBTAT00000055396:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF057218=PhyH=PU(21.0=98.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development