BtaINT0111659 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35902997-35904352:+
Coord C1 exon
chr15:35902997-35903119
Coord A exon
chr15:35903120-35904184
Coord C2 exon
chr15:35904185-35904352
Length
1065 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
AATACATTTCCCCCCCATAGAAT
3' ss Score
9.21
Exon sequences
Seq C1 exon
TTATGAAAAATACTACTTGGTATGTTCCCTGACTTACAATGGAAAGGATCTTTTTAAACCTATTCAATCAAAGAAGGTTGGCACTTATAAGAATTTCTTCTATCTTATTAAATGGGATGAACT
Seq A exon
GTAAGTGAGACTTTTGGCTTTTTATTCTTTCAGTATGTCCTGTTCTTTACCTTTTTCCATGTATGCTTCCAGCTTTCATTTTTAATTACAATTTCCATTAAAATTAGATTCTTACTGATACCTTAAAGATTCTTCTAGATACGATTTTATAGAATGGACTGAAGCTCTTATTTAAAATCTGAAATACTCTTGAATATTCATATTGTTAAATTACAGAACCATGCCATCAATTCTTCCTAGCCTTTGTCTAGTTAAAGTCATGTGTAATTATGGTGTTTTATAATATTGCTTTAGTTTAGTATTTATTCTGTGACAATGTATCTAGGAAGCGTAGTTCTTGGTTAACAGATTTTAAAAATTATTTTCAATCCATGTATAAGATGATATTTTGAACTGTTAATATTTTTAAAATATTATCTTTGAACTAAGGGAATGCTTTCATTATTTAGGCAAATAGGCAATTGCAAAACTTTATTCTGCATTTATTAAATAGTTTCCTAGTTTTCTTTTTTTTAATTACAAAAGTAGCACATGTTTGTGTAAACAGTCAAATAATGTAAAAATGCATATAGGGTGAAAAATGTCATTTTACTTCCAGCACTTAACTGTCTCATGACTCCTCAGAGTGACCACTCTTGACCTCATGTGTCCTTTCAGATCTTATTAAAAAAAAAAAGCACCAGTAAACATATATGTCTGTCTGTGCATGTATGTGCACACAAACATCTAGAGTCAGAAACACTCATGAACATTCATCTAGCTTTTCCTAAAAGAAATAAAGATGATGGTTATCTTGCCTAAAAATTGACATTGCAAGTCTTAAATAAAAGGATTAACAAATTTTTGAAGAGAGAAATGTTATATGTTTGAAATTTTAGTGAAATTTATTTAAGATCTTTTAGTATTTGTTAACCAAGCTTGCTACTTACTTACATAAATTTTACTCAGAATTAAAGATTATTTGAAGAGTCAAATAAAATACCTAAAATTGTCAGTTTCGTTAAAGGGTTAAACTTCTTATTCAATCTAATTTGTTTTTTCTATTAATACATTTCCCCCCCATAG
Seq C2 exon
AATCATTTTTCCCATCCAGATATCACAATTGCCGTTAGAATCACTTCTTCACCTTACTCTTTTTGGAATTTTAAATCAGAGCAGTGGAAGTTCCCCTGATTCTAATAAGCAGAGAAAAGGGCCAGAAGCTTTGGGCAAAGTTTCTTTACCTCTTTTTGACTTTAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901:ENSBTAT00000046627:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(33.9=97.6)
A:
NA
C2:
PF0079219=PI3K_C2=FE(46.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAATACTACTTGGTATGTTCCC
R:
GTCAAAAAGAGGTAAAGAAACTTTGC
Band lengths:
280-1345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development