BtaINT0112105 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003387 | PIP5KL1
Description
Bos taurus phosphatidylinositol-4-phosphate 5-kinase-like 1 (PIP5KL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075847]
Coordinates
chr11:98605648-98605827:-
Coord C1 exon
chr11:98605793-98605827
Coord A exon
chr11:98605704-98605792
Coord C2 exon
chr11:98605648-98605703
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCCGTACTCCCGTCCCTAGAAA
3' ss Score
8.88
Exon sequences
Seq C1 exon
GAGTGCACAGTCTGCGGGTGGCTCGGGGAAAGAAG
Seq A exon
GTGGGTGAGGCCGAGCCGAGTGGACCGGGCCGGAGGGAGGGTGGGAGGCTGAGACCCTGTCTCCTCTCACTCCGTACTCCCGTCCCTAG
Seq C2 exon
AAATACTTCATCGTCATGCAGAGCGTCTTCTATCCCGCCGGCCGCATCTCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003387:ENSBTAT00000043239:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(4.0=100)
A:
NA
C2:
PF0150413=PIP5K=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCTGCGGGTGGCTC
R:
CTCTCAGAGATGCGGCCGG
Band lengths:
85-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development