BtaINT0112106 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003387 | PIP5KL1
Description
Bos taurus phosphatidylinositol-4-phosphate 5-kinase-like 1 (PIP5KL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075847]
Coordinates
chr11:98604305-98605703:-
Coord C1 exon
chr11:98605648-98605703
Coord A exon
chr11:98604418-98605647
Coord C2 exon
chr11:98604305-98604417
Length
1230 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCCAACCCCTCACCTCCAGGTA
3' ss Score
8.28
Exon sequences
Seq C1 exon
AAATACTTCATCGTCATGCAGAGCGTCTTCTATCCCGCCGGCCGCATCTCTGAGAG
Seq A exon
GTGAGTCGGCCTCCCAGCCCCGCCCAGAATGTACCACATGAAGCGCCCACACTCATGGGATAGACAGCGAAAGATCGATCCCAAGATTTCTTGACGGGTCCGAGACCGTGATCCCCACGACCAACGTCTCTTGAGCGCTCAAGAGGCAATGGGTGCTGTGTTGAGTCATTTGCATTCATCATCTTCCTTCCCAGAATATCTCTGAGGAGTAGGTGTCCTTATCATCCCCATTTTGTGGATGAGAAATCGAGGAGGGGAAATCTACATAGCTACTGTGCTAGATGGAGAAGGCAATGGCACACCACTCCAGTACTCTTGCCTGGAAAATCCTATGGACCGAGAAGCCTGGTAGGCTGCAATCCATGGGGTCGCTAAGAGTCGGACACAACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAGTGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGTGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGAAGTGACTTAGCGGCAGCAGCAACTGTGCTAGAAGCAGGGATTCAAACCCAGCCTCTGATTGGACTCGGCCCTCTGAGCCTCCTAGTACCCCCTCCTCTGCCACCAGAGCTCCATATTGGTGCTCCCGCAGGGGCTGCAGACCTCCCACAGGCCCTTGTGGTTCTGCGAGTAGTGTGGGCCCACTCTGTCAGATACCCCAAGGATGACAAGGTACCAAGAGGCAGGCACAGGTAGGGGGAAAGGCTGGACTGGTGTTCAGCCTGAGTTGGAATCCCTGCTCTGCCCTTTAGTCACTGTGTGGTCTTGGGCAAATTGAAAAACCTCTCTGAGGTTTTTTCTTCATCTCTAACAAGGGAACGATAATGGACTGGGGTTGTGCTGAGAATCTGAACAGTCCCCCTGTGGCTGCTCTTGTTTCTTATTACCTTGTGAGCTTTTCCATGTGTCTCAAGTCCGTATAAAATGGAATTCTGTCTTGTAGCTCAGCTGGTAAAGAATCCACCTGCAATGCGGGAGACCTGGGTTCAATCCCTGATTTGGGAAGATCCCCTGGAGATGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACAGTCCATGTGGTCGCAGAGTCAGACACGACTGAGCGACTTTCACTTTCACTTTCTGTCTCCCCAACCCCTCACCTCCAG
Seq C2 exon
GTATGACATCAAGGGCTGCGAGGTGAGCCGTTGGGTGGAGCCCGCCCCTGAGGGCAGCGTCCTTGTTCTGGTGCTGAAAGACCTCAACTTTCAGGGCAAGACCATCAATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003387:ENSBTAT00000043239:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(6.6=100)
A:
NA
C2:
PF0150413=PIP5K=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development