BtaINT0112596 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55286325-55286769:-
Coord C1 exon
chr3:55286624-55286769
Coord A exon
chr3:55286539-55286623
Coord C2 exon
chr3:55286325-55286538
Length
85 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TTATCTTTTCCCTTTGTAAGGCT
3' ss Score
5.99
Exon sequences
Seq C1 exon
CCAAACCTGTCATAAGTCCTCTTGAACTTCGAATGGAAGAATTAAGGCATCATTTTAGGATAGAGTTTGCAGTAGCAGAAGGTGCAAAGAATGTAATGAAATTACTTGGCTCAGGAAAAGTGACAGACAGAAAAGCACTTTCAGAG
Seq A exon
GTAATTTTAAATAAAAATTTTAGCTTAATAAATACTCAAAGAATATAATTATTTAAATGATAATGTTATCTTTTCCCTTTGTAAG
Seq C2 exon
GCTCAAGCAAGATTTAATGAATCAAGTCAGAAGTTGGACCTTTTGAAGTATTCATTAGAGCAGAGATTAAATGAACTTCCCAAGAATCATCCCAAAAGCAGTATTATTATTGAGGAGCTTTCACTTGTTGCATCACCAACACTAAGTCCACGTCAAAGTATGATATCTACCCAAAACCAATATAGTACCCTGTCCAAACCAGCAGCACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900:ENSBTAT00000029201:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF0218511=HR1=PU(53.4=79.6)
A:
NA
C2:
PF0218511=HR1=PD(43.8=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGGAAAAGTGACAGACA
R:
TGCAACAAGTGAAAGCTCCTCA
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]