BtaINT0113933 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001271 | PLG
Description
Bos taurus plasminogen (PLG), mRNA. [Source:RefSeq mRNA;Acc:NM_173951]
Coordinates
chr9:98024170-98026434:-
Coord C1 exon
chr9:98026317-98026434
Coord A exon
chr9:98024242-98026316
Coord C2 exon
chr9:98024170-98024241
Length
2075 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CTGGCACATTTTCCTTCCAGCTC
3' ss Score
8.14
Exon sequences
Seq C1 exon
AGTCCTCATTCGACTGTGGAAAGCCCAAAGTGGAGCCGAAGAAATGTTCTGGAAGGATTGTAGGTGGGTGTGTGTCCAAGCCACACTCTTGGCCCTGGCAAGTCAGCCTTCGAAGAAG
Seq A exon
GTAACACCATTTCCAGAAATGATTTATTCCATCCTTCTGGGTACGCTCTGCAAAACCTTGGGGTTGACATATATACATATGTACATATATACATATACATGTACATATACACTACTGTGTATAAAACAGATAATTAATGTGAACTACTGTACAGCTCAGGGAACCCTACTCCATGCTCTGCGGTGACCTCAAGGACAAGGAAATCCAAACAGGAGGGCCTATCTGTATATGTATTGATAGATCTGTATATGTATGTACATACGTATATGTATAATTGATTCACTTTGCTGCATAGCAGAAACTAACACAACACTGCAAAGAAACTATACTCCAATGAAAATTAAACAAACAGAAAACCTTTCTGCATTCAACTAAATCCACATACCCCCAGTATCAGAACCTGCCTCTAAGTTCAACAAAGGAGTAAGGAAAACTATAAAAAAATTTTTTTTCTGTGTTTGTAAATTGAAGTATAGTTGCTGTACAATATTATATAGGTTTCAGTTTTGCAATAGGGTGATTCACCATTTTTAAAGGTTATACTCCATTTATCGTTATAAAATATAATGTAATAAAATATTGGCTATGGCCCCTATGTTGTACAATATGTCCTTGTGGCTTATTTTATAACTAATAGTTTCTACCTCTTAATCCCCTACCCCTGTATGGCCCCTCCCCTCTCCCTTATCCCCTCTCCCCACTGGTAACCAAAAGTTCCTTCTCTGTATCTGTGATTCTGCTTCTTTTTTTAAATGTTCTTTTCTATGTTATTTAATTTGAAAATAATTTGAAATTAGAATCTTTTTTTTTTTTTTTGATCTGGGTAGCTGTCATCAGAATTGTTAAATGTAGCAATTTATACTAAGCTCCAATCCTGCTGGAAAAGTATGAAAGATGCTTTGAGGGTTTATATAGATACCCACTGTGGCTTTGTAAAATGAAGAGAAAGGGATATTTTTAGAAATGAGACACCTCGTGGGGGAGGGTAAAGATAAAATTATCTATAATATTAAAACACAGATGCAGAGTCTTTTCCCCTTCCTTCAACAGTTTTGTGAACTACTGAATTTAACCAAAAGATGCTCACCCATATAAAAAACACCCCTTCTTCAGTGGAGGGTAGCCATAACTGAAGCGTGATCATCCCCGTCCTCCAGGACCCAGACGGTTCTGGTGATCTTTGACTGGTGTTCGCCTTTGATCAGTCCCTTTTCCTGGGTGTCCCATTCAAAGCCCACACAGAAAACAGGCTGATCCGCCTGTTGATGCTTCCTCGGCACAAGGCTGCACCAGTGCGCATGCGCCCAATCGCGGCGCTCTGTGGTCCTTCTTCCGTTCGCTGGTGAGATGCTGTTCTGGTCCGTATCTTTCTGTGGCTGCCTTGGCTGTTCTTTTCTTTGCCTTATCACGTAGTAACTGCTTGCGATACCTGATCCTGCGATACTGCTTTCACGTATTTTCTAGTCTCTCTTTCCCAAGCTGCGCTGGGGTCTGTTTCCTGATTGATAATTGCCTTGCTGGCTCCCATTCACTTGCATCTGTGTCTCTTCCATTATGATGGTCTTCAGAGCGGCTCATGTGAGTTTTATGAGCTATATCGCACCCCAGCAGTTCTACAACGTGAATGATTTAGGGGATGTTTCCCCCGCCCCAAAGCGAACTTTCTCAAATAGCATGAGCAGATGGCCCCGAATCACGGGCCACTCAGGATCCCATTTGGCACCCTGAAGAATGACTGGTCAGGCCTTACACAGATCTCCTCCAAAAGAAACAGAGGAGACCTCAGTGGGCTGGAGTCCAGGGCCAAAGGGCCTCCTGTTGGTGCCATGCCACTTTGCTCCCCTGTGGCCAGGCCTGGCCTGAGCCCCAGCCCCACCCCACCCCACCCCCCGAGTGGTGGGGTGACCTCCAGAGGACCCACTTACTGCAGGAAGCTCAAAACTCCTACTGTCCTTGCTGCCACCTCGTCCTTTGGGAACATTAATGACCTCGAAGCAGAGTAAGCACCACTTTCGGACTTTCTGTAGAATTAAATCATCAGATTTAACTAAAATCCTGGCACATTTTCCTTCCAG
Seq C2 exon
CTCGAGGCACTTCTGTGGAGGAACTCTGATATCCCCAAAGTGGGTGCTGACTGCTGCCCATTGCCTGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001271:ENSBTAT00000053284:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(17.9=50.0)
A:
NA
C2:
PF0008921=Trypsin=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]